DN621401

Overview
NameDN621401
Unique NameDN621401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 8.539e-50
Identity = 87/141 (61.70%), Postives = 106/141 (75.18%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  YRAGI+P+ ++R+PC KKGG+RFT+NGH YFNLVLVTNV   G + S+ + GS  T W  M RNWG NW S SYL GQ LSF+VT  DG+T+   N+VP+ W
Sbjct:  127 TATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 267          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.115e-49
Identity = 87/141 (61.70%), Postives = 110/141 (78.01%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATN CPPN   SNDNGGWCNPP +HFD++ PAFLQIAQ +AGIVPIS+RR+PC K GGIR+T+ G+ YFNLV+V+NVGGAGDV  +S+KG+K   W  + RNWGQ WQ++  L G+SL+F+V   D R  TS +V+P +W
Sbjct:  116 TATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDW 256          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 4.238e-49
Identity = 84/140 (60.00%), Postives = 113/140 (80.71%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATN CPPN AL+ND+GGWCNPP  HFDM++PA+  I  YRAGIVP+ ++++ C ++GG+RFTV+G +YF LVL+TNV G+G V ++S+KGSKTGW  ++RNWG NWQ NS L GQ+LSF+VT++ G+T+  N+VVP  W
Sbjct:  102 TATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVTSTGGQTLQINSVVPEWW 241          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 9.441e-49
Identity = 85/140 (60.71%), Postives = 107/140 (76.43%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATN+CPPN + S D GGWCNPP +HFDM++PA+  IA Y +GIVP+ + R PC + GGIRF + GH Y+ LVLVTNV G+G V +  +KGS T W +MSRNWG+NWQSN+YL GQ+LSF+V A DG  VT+ +V PANW
Sbjct:  101 TATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANW 240          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.233e-48
Identity = 84/141 (59.57%), Postives = 104/141 (73.76%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  Y AGI+P+ ++R+PC KKGG+RFT+NGH YF LVLVTNV  AG + S+ + GS T  W  M+RNWG  W S +YL GQ LSF+VT +D +T+   NVVP  W
Sbjct:  114 TATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGW 254          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.610e-48
Identity = 83/141 (58.87%), Postives = 107/141 (75.89%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN  L +D+GGWCNPP  HFDMA+PA+ +I  YR GI+P+ ++R+PC KKGG+RFT+NGH YF LVL+TNVG AG + ++ +KGSK+  W AM+ NWG  W S +YL GQ LSF+VT +DG+T+   NVV   W
Sbjct:  109 TATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGW 249          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.780e-47
Identity = 83/140 (59.29%), Postives = 110/140 (78.57%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATN CPPN AL +++GGWCNPP  HFDMAEPA+LQI  Y+AGI+P+ ++++ C ++GGIRFT+ G ++F LVLV+NV G+G V SVS+KG  TGW  ++RNWG NWQ NS L GQ+LSF VT++ G+T+   NVVP+ W
Sbjct:  102 TATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWW 241          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 3.966e-47
Identity = 81/140 (57.86%), Postives = 109/140 (77.86%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            T TN CPPN ALS+++GGWCNPP  HFDMAEPA+LQI  Y+AGIVP+ ++R+PC K+GG+RFT+ G +YF LVL++NV G+G + SV +KG  T    +SRNWG NWQS++ L GQ+L+F VT++ G+T+   N+VPA W
Sbjct:  107 TGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWW 246          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.276e-45
Identity = 81/140 (57.86%), Postives = 104/140 (74.29%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATN CPPN AL +D GGWCNPP +HFDM++PA+ +I  YRAGIVP+ +RR+ C ++GG+RFTV G  +F LVLV NV G+G V +VS++G+ TGW  MSRNWG NWQS + L GQ LSF VT + G+ +   +V PA W
Sbjct:  102 TATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGW 241          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.712e-45
Identity = 79/141 (56.03%), Postives = 110/141 (78.01%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTA-SDGRTVTSNNVVPANW 674
            TATN CPPN    ++ GGWCNPP  HFDMA+PAF+++A +RAGI+P+++RR+PC + GG+RF   G+SY+ L+ V NVGGAGD+ S+++KGS+T W +MS NWG ++Q+ S L GQSLSF+VT+ + G T+ + NV PANW
Sbjct:  109 TATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANW 249          
The following BLAST results are available for this feature:
BLAST of DN621401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP22_ORYSJ8.539e-5061.70Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ1.115e-4961.70Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ4.238e-4960.00Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ9.441e-4960.71Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP23_ORYSJ1.233e-4859.57Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ1.610e-4858.87Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ1.780e-4759.29Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ3.966e-4757.86Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ1.276e-4557.86Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXPA7_ARATH3.712e-4556.03Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621401 ID=DN621401; Name=DN621401; organism=Citrus sinensis; type=EST; length=675bp
CGTTCATTCAATTGGAGTAATAACTATATATAGAACACAATCATTTCTAT
TTATAGAGGCCTAGCGGGTGCCAACAGACCACCACAGCAACAAGACAGGC
CACATCGGCCAGGCCTCAGCCTCACCTACCCCTATTCTCACCCTTTCTCC
CTCACAAACACAATGCCAAATTCAATTAAATATACAATTTCTGATTCACT
TTTTTAAAATCTTAAAATCTAAAACTGACCACCCTCAAAGGTTTGCCCAA
ATTGCCAATTTGCAGGCACAACATTGTTGCTAGTCACAGTCCTGCCGTCA
CTGGCTGTCACTTGGAAAGAAAGACTTTGGCCGTTAAGATAAGAATTGCT
CTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCATCCAGTCTTTG
AACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCCGACATTTGTG
ACCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGTAAACCTTATTCC
TCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAATTGGGACGATGCCGG
CGCGGTATTGGGCAATTTGCAAGAAAGCGGGCTCAGCCATGTCAAAGTGC
TGGAGGGGAGGATTGCACCAACCGCCGTTGTCGTTAGACAGGGCAAGGTT
AGGTGGGCAGAAGTTGGTGGCGGTG
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