DN621401

Overview
NameDN621401
Unique NameDN621401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 8.270e-45
Identity = 82/140 (58.57%), Postives = 104/140 (74.29%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATN CPPN AL +D GGWCNPP  HFDM++PA+ QI  Y+AGIVP+ ++R+ C ++GG+RFTV G +YF LVL+TNV G+G V S  IKG+ TGW  MSRNWG NWQS + L GQ+LSF VT + G+ +   +V PA W
Sbjct:  103 TATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWW 242          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.411e-44
Identity = 78/140 (55.71%), Postives = 101/140 (72.14%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPP+   S   G WCNPP +HFD++ P FL+IAQY+AG+VP+ +RRI CA+ GG++F   G+ YF ++L  NVGGAGD+  + +KG KTGW  M +NWGQNW +   L GQ +SF+VT SDG T   NNV+P NW
Sbjct:  127 TATNFCPPDY--SKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNW 264          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.411e-44
Identity = 78/140 (55.71%), Postives = 101/140 (72.14%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPP+   S   G WCNPP +HFD++ P FL+IAQY+AG+VP+ +RRI CA+ GG++F   G+ YF ++L  NVGGAGD+  + +KG KTGW  M +NWGQNW +   L GQ +SF+VT SDG T   NNV+P NW
Sbjct:  120 TATNFCPPDY--SKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNW 257          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 9.144e-44
Identity = 78/140 (55.71%), Postives = 103/140 (73.57%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCP N + + D   WCNPP +HFD++   FL+IA+Y+AG+VP+ +RRIPC+K GG++F   G+ YF +VL+ NVGGAGD+  V +KG+KTGW  M +NWGQNW + + L GQ LSF+VT SDG T    NV+P NW
Sbjct:  124 TATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNW 261          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.194e-43
Identity = 78/140 (55.71%), Postives = 104/140 (74.29%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TAT+FC PNL LS+D GGWCN P +HF+M+E AFL++A+ +A IVP+ FRR+ C + GG+RFT+ G + F  VL+TNV   G+V +V +KGS+TGW  M RNWGQNWQ ++ L GQ LSF+VT   GRTV + +V P +W
Sbjct:  108 TATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDW 247          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 5.927e-43
Identity = 76/140 (54.29%), Postives = 103/140 (73.57%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCP N + + D   WCNPP +HFD++   FL+IA+Y+AG+VP+ +RRIPC+K GG++F   G+ YF +VL+ NVGGAGD+  V +K +KTGW  M +NWGQNW +++ L GQ LSF+VT +DG T    NV+P NW
Sbjct:  130 TATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNW 267          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 7.741e-43
Identity = 78/140 (55.71%), Postives = 102/140 (72.86%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFC PN  L  D GG CNPP  HF +   +F +IA ++AG++PI +RR+ C + GG+RF V G S+F  VL++NVGGAGDV SV IKG+++GW +M RNWGQ W  NS   GQ LSF++T+SDG+T+T+ NVVP  W
Sbjct:  105 TATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEW 244          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.724e-42
Identity = 76/141 (53.90%), Postives = 106/141 (75.18%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGR-TVTSNNVVPANW 674
            TATN CPPN   +++NGGWCNPP  HFD+ +PAF++IA ++AGI+P+S+RR+ C K GGIRF   G+ Y+ LV V NVGG GD+ ++++KGS+TGW  MS NWG ++Q+ S L GQSLSF++T+   R T+ + N  PA+W
Sbjct:  104 TATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASW 244          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.017e-42
Identity = 74/140 (52.86%), Postives = 102/140 (72.86%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPP+    NDN  WCNPP +HFD+++P FL+IA+Y+AG+VP+ FRR+PCAK GG++F + G+ +F ++L  NVGGAG V ++ IKG++T W AM +NWGQ W +   L GQ LSF++T SDG      +V P +W
Sbjct:  162 TATNFCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDW 299          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.118e-41
Identity = 79/140 (56.43%), Postives = 99/140 (70.71%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFC PN     D GG CNPP +HF +   AF +IA ++AG +P+ +RRI C K+G +RFTV+G   F  VL+TNV G+GD+ +V IKGS+TGW  M RNWGQNW  N+ L  Q+LSF+VT+SD  TVTS NV P NW
Sbjct:  113 TATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNW 252          
The following BLAST results are available for this feature:
BLAST of DN621401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP31_ORYSJ8.270e-4558.57Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ARATH1.411e-4455.71Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ARATH1.411e-4455.71Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP22_ARATH9.144e-4455.71Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP16_ORYSJ1.194e-4355.71Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH5.927e-4354.29Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP10_ORYSJ7.741e-4355.71Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH1.724e-4253.90Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP24_ARATH5.017e-4252.86Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP13_ARATH1.118e-4156.43Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621401 ID=DN621401; Name=DN621401; organism=Citrus sinensis; type=EST; length=675bp
CGTTCATTCAATTGGAGTAATAACTATATATAGAACACAATCATTTCTAT
TTATAGAGGCCTAGCGGGTGCCAACAGACCACCACAGCAACAAGACAGGC
CACATCGGCCAGGCCTCAGCCTCACCTACCCCTATTCTCACCCTTTCTCC
CTCACAAACACAATGCCAAATTCAATTAAATATACAATTTCTGATTCACT
TTTTTAAAATCTTAAAATCTAAAACTGACCACCCTCAAAGGTTTGCCCAA
ATTGCCAATTTGCAGGCACAACATTGTTGCTAGTCACAGTCCTGCCGTCA
CTGGCTGTCACTTGGAAAGAAAGACTTTGGCCGTTAAGATAAGAATTGCT
CTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCATCCAGTCTTTG
AACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCCGACATTTGTG
ACCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGTAAACCTTATTCC
TCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAATTGGGACGATGCCGG
CGCGGTATTGGGCAATTTGCAAGAAAGCGGGCTCAGCCATGTCAAAGTGC
TGGAGGGGAGGATTGCACCAACCGCCGTTGTCGTTAGACAGGGCAAGGTT
AGGTGGGCAGAAGTTGGTGGCGGTG
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