DN621398

Overview
NameDN621398
Unique NameDN621398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN621398 vs. ExPASy Swiss-Prot
Match: AQPM_METTM (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=aqpM PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 49/144 (34.03%), Postives = 72/144 (50.00%), Query Frame = -1 
Query:  252 YWIAQLLGSTVACLL-LKFVTNGQTT----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPK--KGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSW------SWDNHWVYWVGPLIGGGLAGIVYEF 644
            Y IAQLLG+     + L+    G  T     A A   G+  W A++ E+V TF L+ T+   A+D +  KG  G I    IG  V   I   G   G+S+NPA +FGP L          W+ + +Y +GP++G  LA + Y++
Sbjct:  103 YIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGII----IGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQY 242
The following BLAST results are available for this feature:
BLAST of DN621398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
AQPM_METTM8.376e-1134.03Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K13_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621398 ID=DN621398; Name=DN621398; organism=Citrus sinensis; type=EST; length=698bp
TTTTTTTTTTTTTTTTTGAAAGACAAAGCCATAGCCTCGGGACTCCATAA
TTATCGCGATACAATAATCCAGCAGCTCATGACGATGGAAACAGATCAAC
GGCCATAAATTAAACACAAATTAAAAATAAAAAGAAAGAACCTCGGTAAA
AGCAAATTAAATACAACATCCGTGCAAACTCACATAGATGGCAAGCTTTT
AGCTTAGTACTCGGTTGTTGGGAGCTGCTCATGCGACTGGTTAATGAAGA
AGAACTCGTAGACGATGCCAGCTAGCCCACCACCGATGAGTGGCCCGACC
CAGTAGACCCAGTGGTTGTCCCAGCTCCAGCTCACCAAAGCTGGCCCGAA
TGACACTGCTGGGTTCATTGAAGCTCCATCAAACGCCCCGCCCGCCAAGA
TGTTGGCTCCTACAATGAAACCAATTGCAATTGGTGCAATTGTCCCCAAG
CTTCCCTTCTTTGGGTCCAGGGCTGTGGCATACACTGTGTACACTAGTCC
GAATGTCATCACGATCTCGAAAACGACTGCGTTCCATGCACCAACTCCAG
ATGAGAGAGCAAAAGCAGATGTGGTCTGGCCGTTGGTAACGAACTTAAGA
AGCAAGCATGCGACGGTGGATCCAAGAAGCTGGGCGATCCAGTAGAGGAT
GCCACGTAGAAGGGAGATGTTACCTCCAACGAAGGCGCCAAAGGTGAC
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