DN621392

Overview
NameDN621392
Unique NameDN621392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_RHIEC (Glycogen synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=glgA PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.051e-17
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = -1
Query:  327 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 653
            H++ AG D I+IPSRFEPCG+ QL+A+RYG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  360 HLMQAGCDAIIIPSRFEPCGLTQLYALRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQ-FSPVTETGMLQAIRRAMHFYADRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_ANASK (Glycogen synthase OS=Anaeromyxobacter sp. (strain K) GN=glgA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = -1
Query:  324 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEE-----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 653
            H I AGAD  L+PSRFEPCG+ Q++++RYGTVP+V + GGL DTVE+       TGF+   ++            A+ T  RRAL  +   +A   +++ GMA+D SW+  A ++E
Sbjct:  362 HRIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRAVGGLADTVEDFDGVARGTGFRFSEYTPQ----------ALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.016e-16
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = -1
Query:  321 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ--ALAEMMKNGMAQDLSWKGPAKKWEE 653
            H I AG D +L+PSRFEPCG+ QL+AM+YGTVP+V  TGGL DTVE  F  F          A  P+ V  +   +R A++T+     +   +MK GM +D +W   A+++E+
Sbjct:  523 HRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVET-FNPFGAKGEEGTGWAFSPLTVDKMLWALRTAMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQ 634          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_RHILW (Glycogen synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=glgA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.633e-16
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = -1
Query:  327 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 653
            H++ AG D I+IPSRFEPCG+ QL+ +RYG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  360 HLMQAGCDAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQ-FSPVTETGMLQAIRRAMHFYADRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_RHIE6 (Glycogen synthase OS=Rhizobium etli (strain CIAT 652) GN=glgA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.633e-16
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = -1
Query:  327 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 653
            H++ AG D I+IPSRFEPCG+ QL+ +RYG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  360 HLMQAGCDAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQ-FSPVTETGLLQAIRRAMHFYADRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: SSY3_SOLTU (Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 49/116 (42.24%), Postives = 63/116 (54.31%), Query Frame = -1
Query:  321 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDT---VEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 653
            H+I AGADFIL+PS FEPCG+ QL AMRYG++P+V  TGGL DT   V+      Q      +  + D  D   V   + RAL+ +  G      + K  M QD SW  PA  + E
Sbjct: 1106 HLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQQCGLEPNGFSFDGADAGGVDYALNRALSAWYDGRDWFNSLCKQVMEQDWSWNRPALDYLE 1221          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: SSY21_ORYSJ (Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 51/116 (43.97%), Postives = 64/116 (55.17%), Query Frame = -1
Query:  312 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLL 653
            H + AGAD +L+PSRFEPCG+ QL+AM YGTVP+V + GGL DTVE    +    +G      EA   +D         R   T    +   + K GM QDLSW   AK +EE LL
Sbjct:  632 HRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEESGLGWTFEKAEANRLIDALGHCLNTYRNYRT----SWEGLQKRGMMQDLSWDNAAKLYEEVLL 743          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA1_RHIME (Glycogen synthase 1 OS=Rhizobium meliloti GN=glgA1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = -1
Query:  327 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEA---VDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 653
            H++ AGAD ILIPSRFEPCG+ QL+ +RYG VP+VA TGGL DT+ +        + S  C       PV    +   +RR L  Y    L A +   GM  D+SW   A+++
Sbjct:  361 HLMQAGADAILIPSRFEPCGLTQLYGLRYGCVPVVARTGGLTDTIIDA----NEAALSAKCATGFHFLPVTTDGLRLAIRRVLRAYNEPKLWARLQYQGMKSDVSWAKSAERY 469          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPS (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=glgA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.867e-16
Identity = 50/116 (43.10%), Postives = 64/116 (55.17%), Query Frame = -1
Query:  327 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMG-SFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 653
            H I AGAD +L+PSRFEPCG+ QL A+RYG VP+VA  GGL DTV +       TG   G  FS       PV    ++  + +  A Y   A    +  NGM  D+SWK PA+ +
Sbjct:  364 HQIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS-------PVTADMLTAALTKTRALYADHATWRNLQINGMTTDVSWKNPAQHY 472          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_RHIL3 (Glycogen synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=glgA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.867e-16
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = -1
Query:  327 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 653
            H++ AG D I+IPSRFEPCG+ QL+ +RYG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  360 HLMQAGCDAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQFA-PVTETGMLQAIRRAMHFYQDRKLWTQLQKQGMKSDVSWEKSAERY 468          
The following BLAST results are available for this feature:
BLAST of DN621392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
GLGA_RHIEC9.051e-1741.82Glycogen synthase OS=Rhizobium etli (strain CFN 42... [more]
GLGA_ANASK1.544e-1641.38Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
SSY1_WHEAT2.016e-1642.48Starch synthase 1, chloroplastic/amyloplastic OS=T... [more]
GLGA_RHILW2.633e-1640.91Glycogen synthase OS=Rhizobium leguminosarum bv. t... [more]
GLGA_RHIE62.633e-1640.91Glycogen synthase OS=Rhizobium etli (strain CIAT 6... [more]
SSY3_SOLTU3.439e-1642.24Soluble starch synthase 3, chloroplastic/amyloplas... [more]
SSY21_ORYSJ3.439e-1643.97Soluble starch synthase 2-1, chloroplastic/amylopl... [more]
GLGA1_RHIME3.439e-1641.59Glycogen synthase 1 OS=Rhizobium meliloti GN=glgA1... [more]
GLGA_RHOPS5.867e-1643.10Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_RHIL35.867e-1640.91Glycogen synthase OS=Rhizobium leguminosarum bv. v... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621392 ID=DN621392; Name=DN621392; organism=Citrus sinensis; type=EST; length=653bp
AGAGTGGCGACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAACT
TAATATTTCATTATACAAGGTAAACACTAATGTCTCAACTCCAAACCATT
ATTGAAAATAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTAA
GTAATATCTTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAAA
TAAAAGTGGAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCCT
TGGCAAGAGGAGCAATTTCTTCGCCGTCAATTCCAGGTTCACTACCAGCA
ACTTCCAGGTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCCA
TGAAAGATCTTGAGCCATGCCATTTTTCATCATTTCAGCCAAAGCTTGAG
TACCATAGGTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCACA
TCTACTGGATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGAA
TCCTGTAAAGCCTTCTTCCACAGTGTCAACCAAACCACCAGTGGAAGCCA
CGATAGGTACGGTTCCATAACGCATGGCATGTAATTGAATGATACCACAA
GGTTCAAATCTGCTTGGAATCAAAATAAAATCAGCTCCTGCTATTATCAT
ATG
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