DN621392

Overview
NameDN621392
Unique NameDN621392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_AERHH (Glycogen synthase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 41/119 (34.45%), Postives = 62/119 (52.10%), Query Frame = -1
Query:  321 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 653
            H++ AGADF L+PS FEPCG+ Q++++ YGT+P+V + GGL DTV       E  TGF            DP     +   +RR+L  Y    +  A + +N M    +W     ++E+
Sbjct:  369 HLVEAGADFFLMPSLFEPCGLNQMYSLAYGTLPLVRAVGGLKDTVVDWDADPEQATGFCFN---------DPT-ANILLDAMRRSLLYYLQDPEQFARVQRNAMNTRFNWPDSVTQYEQ 477          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_PHOPR (Glycogen synthase OS=Photobacterium profundum GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 40/119 (33.61%), Postives = 64/119 (53.78%), Query Frame = -1
Query:  303 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLE 653
            H + AG DF ++PS FEPCG+ Q++++ YGT+PIV S GGL DTV +     Q+ +  +     D     A+   ++R+L  Y    Q    + +N MA   +W   A+++ +  L  E
Sbjct:  380 HCVEAGVDFFMMPSEFEPCGLNQMYSLAYGTLPIVRSVGGLKDTVIDYDQTPQVATGFI----YDTPTPEALLIKLQRSLLLYCQRPQEFKRLQQNAMACKFNWDESAEQYLDMYLGGE 494          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_PELPB (Glycogen synthase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 35/116 (30.17%), Postives = 65/116 (56.03%), Query Frame = -1
Query:  321 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 653
            H+ IAG D +L+P   E CG+IQ+ AM YGT+P+  + GG+V+T+    EE  +GF    +S +          ++   +  ALA +   ++  +++   M +D +WK  A+++++
Sbjct:  376 HLAIAGLDILLMPGMIESCGMIQMFAMNYGTIPVAYAGGGIVETIEERDEESGSGFIFHDYSAE----------SLVGKLEEALACFHDEESWQQIVMTAMTRDFTWKKSAEEYDQ 481          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_LEPBP (Glycogen synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = -1
Query:  348 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGF-TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSW 653
            H I A +DF L+PS FEPCG+ Q+++  YGT+PIV+  GGL DTV+E     F+ G         +P D +++   + RA   + +     ++KN M  D +W
Sbjct:  361 HQIEAASDFFLMPSLFEPCGLNQMYSHVYGTIPIVSRVGGLRDTVDESIDIQFKTGI------VFEPNDKSSLGYALERANDLFVSPERDHVVKNMMNLDWTW 457          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_LEPBA (Glycogen synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = -1
Query:  348 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGF-TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSW 653
            H I A +DF L+PS FEPCG+ Q+++  YGT+PIV+  GGL DTV+E     F+ G         +P D +++   + RA   + +     ++KN M  D +W
Sbjct:  361 HQIEAASDFFLMPSLFEPCGLNQMYSHVYGTIPIVSRVGGLRDTVDESIDIQFKTGI------VFEPNDKSSLGYALERANDLFVSPERDHVVKNMMNLDWTW 457          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_CLOD6 (Glycogen synthase OS=Clostridium difficile (strain 630) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = -1
Query:  318 IIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEET 647
            I A +D  L+PS FEPCGI Q+ AMRYG++PIV  TGGL DTV     FTG   G    +  A +      +   ++ A+  +   +   ++++N M  D SWK  AK++ ET
Sbjct:  368 IYAASDMFLMPSLFEPCGIGQMLAMRYGSLPIVRETGGLRDTVTPYNKFTGEGNGFSFKNYNAHE------MFFCLKNAIKVFKDKEKWIKLVENAMKTDNSWKKSAKEYIET 474          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_CHLFF (Glycogen synthase OS=Chlamydophila felis (strain Fe/C-56) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = -1
Query:  498 MIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 650
            ++   AD + IPS FEPCG+ QL  MRYGTVP+  +TGGL DTV  G  GF
Sbjct:  367 LLYGAADMLCIPSHFEPCGLTQLIGMRYGTVPLARATGGLADTVTPGINGF 417          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_ALKMQ (Glycogen synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = -1
Query:  327 IIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVE-------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 647
            I  G+DF L+PS FEPCG+ QL A+RYGTVPIV  TGGL DT++       EG  GF   +++             +  T++ A+  Y   +   ++++N M   + W+  AK +
Sbjct:  364 IYGGSDFFLMPSLFEPCGLGQLIALRYGTVPIVRETGGLKDTIQYYDEVSKEG-NGFTFTNYNAH----------DMFNTIKEAIRLYPDKRKFNKVVRNAMNTKVGWEESAKTY 467          
The following BLAST results are available for this feature:
BLAST of DN621392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
GLGA_AERHH5.682e-1134.45Glycogen synthase OS=Aeromonas hydrophila subsp. h... [more]
GLGA_PHOPR7.422e-1133.61Glycogen synthase OS=Photobacterium profundum GN=g... [more]
GLGA_PELPB7.422e-1130.17Glycogen synthase OS=Pelodictyon phaeoclathratifor... [more]
GLGA_LEPBP9.693e-1136.89Glycogen synthase OS=Leptospira biflexa serovar Pa... [more]
GLGA_LEPBA9.693e-1136.89Glycogen synthase OS=Leptospira biflexa serovar Pa... [more]
GLGA_CLOD69.693e-1138.94Glycogen synthase OS=Clostridium difficile (strain... [more]
GLGA_CHLFF9.693e-1156.86Glycogen synthase OS=Chlamydophila felis (strain F... [more]
GLGA_ALKMQ9.693e-1135.65Glycogen synthase OS=Alkaliphilus metalliredigens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621392 ID=DN621392; Name=DN621392; organism=Citrus sinensis; type=EST; length=653bp
AGAGTGGCGACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAACT
TAATATTTCATTATACAAGGTAAACACTAATGTCTCAACTCCAAACCATT
ATTGAAAATAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTAA
GTAATATCTTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAAA
TAAAAGTGGAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCCT
TGGCAAGAGGAGCAATTTCTTCGCCGTCAATTCCAGGTTCACTACCAGCA
ACTTCCAGGTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCCA
TGAAAGATCTTGAGCCATGCCATTTTTCATCATTTCAGCCAAAGCTTGAG
TACCATAGGTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCACA
TCTACTGGATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGAA
TCCTGTAAAGCCTTCTTCCACAGTGTCAACCAAACCACCAGTGGAAGCCA
CGATAGGTACGGTTCCATAACGCATGGCATGTAATTGAATGATACCACAA
GGTTCAAATCTGCTTGGAATCAAAATAAAATCAGCTCCTGCTATTATCAT
ATG
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