DN621392

Overview
NameDN621392
Unique NameDN621392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_SYNS9 (Glycogen synthase OS=Synechococcus sp. (strain CC9902) GN=glgA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 55/142 (38.73%), Postives = 77/142 (54.23%), Query Frame = -1
Query:  231 MIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 650
            +I AG+D  L+PSRFEPCGI QL+AMRYG+VP+V + GGLVDTV         G+ F  D    +PVD    +  VR   A     +  ++ K GM +D SW   A +++  L+  +V G  EP  D   +   ++   A P
Sbjct:  343 LIYAGSDAFLMPSRFEPCGISQLYAMRYGSVPVVRNVGGLVDTVPPHDPNADRGTGFCFD--RFEPVDF--YTALVRAWEAYRHRSSWQDLQKRGMTEDYSWDRSAVEYD--LMYKDVCGIKEPTPDAALLEQFSRGQDADP 478          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_METSB (Glycogen synthase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=glgA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 45/116 (38.79%), Postives = 62/116 (53.45%), Query Frame = -1
Query:  306 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 653
            H I AGAD I+IPSRFEPCG+ QL A+RYG +PIVA  GGL DT+ +              +   P      +T  R A      +   E+++NGM  D+SW+ PA  + +   +L
Sbjct:  364 HRIQAGADAIVIPSRFEPCGLTQLCALRYGALPIVARVGGLADTIIDANEMALASGIGTGLQFSPPTADMLGATLERAARLWAEPEIWDELIENGMLTDVSWRRPAALYAKLFRDL 479          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_GEOSF (Glycogen synthase OS=Geobacter sp. (strain FRC-32) GN=glgA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 48/111 (43.24%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  321 IIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTV-EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 647
            I AG+D  L+PSR+EPCG+ Q+ A+RYG VP+V  TGGL DT+ +E     +   FS      D     A+   + RA+  Y  +A   +MMK GMA D SW   A K+EE
Sbjct:  368 IYAGSDIFLMPSRYEPCGLGQMIALRYGAVPVVRKTGGLADTIFDERDQPKEPNGFS-----FDEYTPEALWEALSRAVEAYSDKAAWKKMMKRGMAGDFSWNTSALKYEE 473          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_FLAJ1 (Glycogen synthase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=glgA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = -1
Query:  321 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV--DPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEE 653
            H+I AG+D+IL+PSR EPCG+ Q++AMRYGT+PIV  TGGL DTV +         F  D   +  D   V  +  ++ RA+  Y  + +   +++ GMA D SW+   +++ E
Sbjct:  360 HLIYAGSDYILMPSRVEPCGLNQMYAMRYGTIPIVRRTGGLRDTVID---------FGDDGNGICHDQASVGDICYSINRAVKLYDDKISFNTVLRRGMAADHSWERVCQEYIE 464          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_DEIGD (Glycogen synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=glgA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 48/110 (43.64%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  327 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 653
            H I AGAD   +PSRFEPCG+ Q+ A+RYGT+PIV  TGGLVDTV  G  GF+    + +          A++T  R A  T          MK GM  D SW+G A+ +
Sbjct:  338 HRIYAGADAFAMPSRFEPCGLSQMIALRYGTLPIVRETGGLVDTV-PGDVGFRFADATTE----------ALATACRDARTTLEDVVEWQSRMKRGMELDFSWEGSARHY 436          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_AZOSE (Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN=glgA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 51/125 (40.80%), Postives = 71/125 (56.80%), Query Frame = -1
Query:  291 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEE-GFTGFQMGSFS--VDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGS 653
            H I AGAD  ++PSRFEPCG+ Q+++ RYGT PIV +TGGLVD+V +    G   G  S  +  EA      AA+   V RAL  +  + A   +  NGMA+D SW G A ++    + +  A +
Sbjct:  373 HRIEAGADAFVMPSRFEPCGLNQMYSQRYGTPPIVRATGGLVDSVGDFSVDGLHRGEASGFLFAEATP----AALVEAVDRALKVFADRVAWRTLCCNGMARDFSWGGSAGRYARLYVAMRAAAA 493          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: SSY22_ORYSJ (Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 50/118 (42.37%), Postives = 67/118 (56.78%), Query Frame = -1
Query:  312 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT--QALAEMMKNGMAQDLSWKGPAKKWEETLL 653
            H I AGAD +L+PSRFEPCG+ QL+AM YGTVP+V + GGL DTV   + F    +G      EA   +D       +   L TY    ++   +   GMAQDLSW   A+ +E+ L+
Sbjct:  577 HRITAGADVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFADTGLGWTFDRAEANRMID------ALGHCLNTYRNYKESWRGLQARGMAQDLSWDHAAELYEDVLV 688          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_SERP5 (Glycogen synthase OS=Serratia proteamaculans (strain 568) GN=glgA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = -1
Query:  327 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 653
            H II GAD I++PSRFEPCG+ QL+ ++YGT+P+V  TGGL DTV     E    G   G    DC+AV      A+   +RRA+  +   +    + ++ M+ D  W+  A+++
Sbjct:  361 HRIIGGADVIMVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVVDCALENLADGSASGFVFDDCDAV------ALGNAIRRAMVLWSRPKHWRHVQRHAMSVDFGWQVAAQEY 469          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_SALAR (Glycogen synthase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=glgA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 46/123 (37.40%), Postives = 65/123 (52.85%), Query Frame = -1
Query:  303 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 653
            H I+ GAD IL+PSRFEPCG+ QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  361 HRIMGGADIILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPT (Glycogen synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = -1
Query:  306 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD--PVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 653
            H I AGAD +L+PSRFEPCG+ QL A+RYG VP+VA  GGL DTV +     +M + +     V   PV   A+     +  A +    A   +  NGM  D+SWK PA+ + +   +L
Sbjct:  364 HQIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVD---ANEMATATGVATGVQFAPVTTDALIKAFGKTRALFADVVAWRNLQINGMTTDVSWKNPAQHYAKLYRDL 479          
The following BLAST results are available for this feature:
BLAST of DN621392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
GLGA_SYNS94.967e-1538.73Glycogen synthase OS=Synechococcus sp. (strain CC9... [more]
GLGA_METSB4.967e-1538.79Glycogen synthase OS=Methylocella silvestris (stra... [more]
GLGA_GEOSF4.967e-1543.24Glycogen synthase OS=Geobacter sp. (strain FRC-32)... [more]
GLGA_FLAJ14.967e-1539.47Glycogen synthase OS=Flavobacterium johnsoniae (st... [more]
GLGA_DEIGD4.967e-1543.64Glycogen synthase OS=Deinococcus geothermalis (str... [more]
GLGA_AZOSE4.967e-1540.80Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN... [more]
SSY22_ORYSJ6.487e-1542.37Soluble starch synthase 2-2, chloroplastic/amylopl... [more]
GLGA_SERP56.487e-1538.26Glycogen synthase OS=Serratia proteamaculans (stra... [more]
GLGA_SALAR6.487e-1537.40Glycogen synthase OS=Salmonella arizonae (strain A... [more]
GLGA_RHOPT6.487e-1540.34Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621392 ID=DN621392; Name=DN621392; organism=Citrus sinensis; type=EST; length=653bp
AGAGTGGCGACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAACT
TAATATTTCATTATACAAGGTAAACACTAATGTCTCAACTCCAAACCATT
ATTGAAAATAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTAA
GTAATATCTTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAAA
TAAAAGTGGAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCCT
TGGCAAGAGGAGCAATTTCTTCGCCGTCAATTCCAGGTTCACTACCAGCA
ACTTCCAGGTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCCA
TGAAAGATCTTGAGCCATGCCATTTTTCATCATTTCAGCCAAAGCTTGAG
TACCATAGGTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCACA
TCTACTGGATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGAA
TCCTGTAAAGCCTTCTTCCACAGTGTCAACCAAACCACCAGTGGAAGCCA
CGATAGGTACGGTTCCATAACGCATGGCATGTAATTGAATGATACCACAA
GGTTCAAATCTGCTTGGAATCAAAATAAAATCAGCTCCTGCTATTATCAT
ATG
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