DN621392

Overview
NameDN621392
Unique NameDN621392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPA (Glycogen synthase OS=Rhodopseudomonas palustris GN=glgA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = -1
Query:  306 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD--PVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 653
            H I AGAD +L+PSRFEPCG+ QL A+RYG VP+VA  GGL DTV +     +M + +     V   PV   A+     +  A +    A   +  NGM  D+SWK PA+ + +   +L
Sbjct:  364 HQIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVD---ANEMATATGVATGVQFAPVTTDALIKAFGKTRALFADVVAWRNLQINGMTTDVSWKNPAQHYAKLYRDL 479          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_PROM1 (Glycogen synthase OS=Prochlorococcus marinus (strain NATL1A) GN=glgA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 57/142 (40.14%), Postives = 75/142 (52.82%), Query Frame = -1
Query:  231 MIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 650
            +I  GAD  L+PSRFEPCGI QL AMRYG +PIV   GGLVDTVE      + GS F  D    +P+D    ++ VR   A    ++  E+    M+   SW   AK++E  L+  +V G  EP  D  E+   +    A P
Sbjct:  343 LIYGGADAFLMPSRFEPCGISQLLAMRYGAIPIVRKVGGLVDTVEPYNPMNETGSGFCFD--RYEPIDF--YTSLVRSWEAYRHQKSWKELQLRAMSNKYSWDRSAKEYE--LMYKDVCGIKEPSPDAAEVEKFSYGQEADP 478          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: SSY2_SOLTU (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 48/128 (37.50%), Postives = 65/128 (50.78%), Query Frame = -1
Query:  312 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE--------------MMKNGMAQDLSWKGPAKKWEETLL 653
            H I AGAD +L+PSRFEPCG+ QL+AM+YGT+P+V + GGL DTV                +  DP + + +  T  RA A+    AL                +    M QDLSW   A+ +EE L+
Sbjct:  650 HRITAGADILLMPSRFEPCGLNQLYAMKYGTIPVVHAVGGLRDTV----------------QPFDPFNESGLGWTFSRAEASQLIHALGNCLLTYREYKKSWEGIQTRCMTQDLSWDNAAQNYEEVLI 761          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_XANCP (Glycogen synthase OS=Xanthomonas campestris pv. campestris GN=glgA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  327 IIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN-GMAQDLSWKGPAKKW 647
            + AGADF+L+PSRFEPCG+ Q++A R+G +PI  +TGGL+DTV++G TGF     S +          A+   + RA  T+   +L   M+   M +   W    KK+
Sbjct:  359 MFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQQASAE----------ALRRCLERAFRTFRLPSLLSAMRRAAMLRPSGWDVAGKKY 456          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_XANC8 (Glycogen synthase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=glgA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  327 IIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN-GMAQDLSWKGPAKKW 647
            + AGADF+L+PSRFEPCG+ Q++A R+G +PI  +TGGL+DTV++G TGF     S +          A+   + RA  T+   +L   M+   M +   W    KK+
Sbjct:  359 MFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQQASAE----------ALRRCLERAFRTFRLPSLLSAMRRAAMLRPSGWDVAGKKY 456          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_SALTY (Glycogen synthase OS=Salmonella typhimurium GN=glgA PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 46/123 (37.40%), Postives = 65/123 (52.85%), Query Frame = -1
Query:  303 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 653
            H I+ GAD IL+PSRFEPCG+ QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  361 HRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_SALTI (Glycogen synthase OS=Salmonella typhi GN=glgA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 46/123 (37.40%), Postives = 65/123 (52.85%), Query Frame = -1
Query:  303 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 653
            H I+ GAD IL+PSRFEPCG+ QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  361 HRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_SALSV (Glycogen synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=glgA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 46/123 (37.40%), Postives = 65/123 (52.85%), Query Frame = -1
Query:  303 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 653
            H I+ GAD IL+PSRFEPCG+ QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  361 HRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_SALPK (Glycogen synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=glgA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 46/123 (37.40%), Postives = 65/123 (52.85%), Query Frame = -1
Query:  303 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 653
            H I+ GAD IL+PSRFEPCG+ QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  361 HRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
BLAST of DN621392 vs. ExPASy Swiss-Prot
Match: GLGA_SALPC (Glycogen synthase OS=Salmonella paratyphi C (strain RKS4594) GN=glgA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 46/123 (37.40%), Postives = 65/123 (52.85%), Query Frame = -1
Query:  303 HMIIAGADFILIPSRFEPCGIIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNLE 653
            H I+ GAD IL+PSRFEPCG+ QL+ ++YGT+P+V  TGGL DTV +        G   G    D  A       ++   +RRA   +   +L   + +  MA D SW+  AK + E    L+
Sbjct:  361 HRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNA------WSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477          
The following BLAST results are available for this feature:
BLAST of DN621392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
GLGA_RHOPA6.487e-1540.34Glycogen synthase OS=Rhodopseudomonas palustris GN... [more]
GLGA_PROM16.487e-1540.14Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
SSY2_SOLTU8.472e-1537.50Granule-bound starch synthase 2, chloroplastic/amy... [more]
GLGA_XANCP8.472e-1538.89Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]
GLGA_XANC88.472e-1538.89Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]
GLGA_SALTY8.472e-1537.40Glycogen synthase OS=Salmonella typhimurium GN=glg... [more]
GLGA_SALTI8.472e-1537.40Glycogen synthase OS=Salmonella typhi GN=glgA PE=3... [more]
GLGA_SALSV8.472e-1537.40Glycogen synthase OS=Salmonella schwarzengrund (st... [more]
GLGA_SALPK8.472e-1537.40Glycogen synthase OS=Salmonella paratyphi A (strai... [more]
GLGA_SALPC8.472e-1537.40Glycogen synthase OS=Salmonella paratyphi C (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621392 ID=DN621392; Name=DN621392; organism=Citrus sinensis; type=EST; length=653bp
AGAGTGGCGACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAACT
TAATATTTCATTATACAAGGTAAACACTAATGTCTCAACTCCAAACCATT
ATTGAAAATAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTAA
GTAATATCTTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAAA
TAAAAGTGGAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCCT
TGGCAAGAGGAGCAATTTCTTCGCCGTCAATTCCAGGTTCACTACCAGCA
ACTTCCAGGTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCCA
TGAAAGATCTTGAGCCATGCCATTTTTCATCATTTCAGCCAAAGCTTGAG
TACCATAGGTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCACA
TCTACTGGATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGAA
TCCTGTAAAGCCTTCTTCCACAGTGTCAACCAAACCACCAGTGGAAGCCA
CGATAGGTACGGTTCCATAACGCATGGCATGTAATTGAATGATACCACAA
GGTTCAAATCTGCTTGGAATCAAAATAAAATCAGCTCCTGCTATTATCAT
ATG
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