DN621390

Overview
NameDN621390
Unique NameDN621390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: TERA_RAT (Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus GN=Vcp PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 48/81 (59.26%), Postives = 54/81 (66.67%), Query Frame = -3 
Query:  182 EIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGGSDPFASSAGGA--------EDDDLY 400
            EI+  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP     G  GG+ P   S GG          DDDLY
Sbjct:  730 EIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPS----GNQGGAGPSQGSGGGTGGNVYTEDNDDDLY 805
[Close]
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 48/81 (59.26%), Postives = 54/81 (66.67%), Query Frame = -3 
Query:  182 EIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGGSDPFASSAGGA--------EDDDLY 400
            EI+  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP     G  GG+ P   S GG          DDDLY
Sbjct:  730 EIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPS----GNQGGAGPSQGSGGGTGGSVYTEDNDDDLY 805
[Close]
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: TERA_MOUSE (Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 48/81 (59.26%), Postives = 54/81 (66.67%), Query Frame = -3 
Query:  182 EIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGGSDPFASSAGGA--------EDDDLY 400
            EI+  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP     G  GG+ P   S GG          DDDLY
Sbjct:  730 EIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPS----GNQGGAGPSQGSGGGTGGSVYTEDNDDDLY 805
[Close]
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 48/81 (59.26%), Postives = 54/81 (66.67%), Query Frame = -3 
Query:  182 EIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGGSDPFASSAGGA--------EDDDLY 400
            EI+  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP     G  GG+ P   S GG          DDDLY
Sbjct:  730 EIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPS----GNQGGAGPSQGSGGGTGGSVYTEDNDDDLY 805
[Close]
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: TERA_BOVIN (Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 48/81 (59.26%), Postives = 54/81 (66.67%), Query Frame = -3 
Query:  182 EIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGGSDPFASSAGGA--------EDDDLY 400
            EI+  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP     G  GG+ P   S GG          DDDLY
Sbjct:  730 EIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPS----GNQGGAGPSQGSGGGTGGNVYTEDNDDDLY 805
[Close]
BLAST of DN621390 vs. ExPASy Swiss-Prot
Match: TERA_DANRE (Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.062e-16
Identity = 48/81 (59.26%), Postives = 55/81 (67.90%), Query Frame = -3 
Query:  182 EIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGGSDPFASSAGGA--------EDDDLY 400
            EI+  HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP +      GGS P   S+GG          DDDLY
Sbjct:  730 EIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSS----NQGGSGPSQGSSGGGGGNVFNEDNDDDLY 805
The following BLAST results are available for this feature:
BLAST of DN621390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TERA_RAT1.578e-1659.26Transitional endoplasmic reticulum ATPase OS=Rattu... [more]
TERA_PIG1.578e-1659.26Transitional endoplasmic reticulum ATPase OS=Sus s... [more]
TERA_MOUSE1.578e-1659.26Transitional endoplasmic reticulum ATPase OS=Mus m... [more]
TERA_HUMAN1.578e-1659.26Transitional endoplasmic reticulum ATPase OS=Homo ... [more]
TERA_BOVIN1.578e-1659.26Transitional endoplasmic reticulum ATPase OS=Bos t... [more]
TERA_DANRE2.062e-1659.26Transitional endoplasmic reticulum ATPase OS=Danio... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06K09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621390 ID=DN621390; Name=DN621390; organism=Citrus sinensis; type=EST; length=405bp
TATATCAAAATAGAGAATTGCGTTCCAGCAGCCTAAACTCATTCAACCTT
TTCGGCTTTATGGCAGAAACATTGAAGCTTTTGACAAATCATATGGCGAA
TCGTCAAATACATAGGTAAACCAACATCAGCATAAATTAGACAGCAAACT
GATAGACTTTAAACATGGAGATAATCTAACTGTAAAGATCGTCGTCTTCT
GCGCCACCTGCAGAAGACGCAAAAGGATCTGATCCGCCATCAGCACCAGG
GGGAGCAGCATCAGGAAACCTAAATTCACTTCCAAACCCTCTTGACTGCT
GCAATGTTTGAGCAAATGCTTGGTATTTGCGTATGTCAGCATCACTGACA
CTTCTACGAGCATACTTCATTGATTCCTCGAAATGCACAGCTTTAATCTC
AGCCT
back to top