DN621358

Overview
NameDN621358
Unique NameDN621358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDIB_CANFA (Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.236e-28
Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PI NTND++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA VST AET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ N+Y  +TG
Sbjct:  307 PIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIVSTTAETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTG 426
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDIB_RAT (Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 8.144e-28
Identity = 56/120 (46.67%), Postives = 85/120 (70.83%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D + P +  +    FIS +YDATTHFE+T  D+ ++Y  +TG
Sbjct:  307 PIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTG 426
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.144e-28
Identity = 56/120 (46.67%), Postives = 85/120 (70.83%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D + P +  +    FIS +YDATTHFE+T  D+ ++Y  +TG
Sbjct:  307 PIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTG 426
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDIB_PONAB (Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.064e-27
Identity = 57/120 (47.50%), Postives = 84/120 (70.00%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ N+Y  +TG
Sbjct:  307 PIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESLIFISRTYDATTHFETTCDDIKNIYKRMTG 426
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDI1_SCHPO (Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe GN=gdi1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.064e-27
Identity = 58/120 (48.33%), Postives = 83/120 (69.17%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PIPNT++  SVQ+I+PQ Q+ R+ D+Y+   S  HNV PKG ++A +ST  ET +P +E+ PG+ LLGPV E F  + + YEPV + + D C+IS S DAT+HFE+   DV ++Y  +TG
Sbjct:  307 PIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIAPGLKLLGPVVESFSRVQEIYEPVTDGTKDQCYISKSVDATSHFETLTCDVRDIYKRMTG 426
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDIB_BOVIN (Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 9.956e-26
Identity = 54/120 (45.00%), Postives = 81/120 (67.50%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PI NTND++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA  ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ ++Y  + G
Sbjct:  307 PIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKDIYKRMMG 426
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDIB_PIG (Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.300e-25
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PI NT+D++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA  ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ ++Y  +TG
Sbjct:  307 PIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLKPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCGDIKDIYKRMTG 426
The following BLAST results are available for this feature:
BLAST of DN621358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GDIB_CANFA6.236e-2848.33Rab GDP dissociation inhibitor beta OS=Canis famil... [more]
GDIB_RAT8.144e-2846.67Rab GDP dissociation inhibitor beta OS=Rattus norv... [more]
GDIB_MOUSE8.144e-2846.67Rab GDP dissociation inhibitor beta OS=Mus musculu... [more]
GDIB_PONAB1.064e-2747.50Rab GDP dissociation inhibitor beta OS=Pongo abeli... [more]
GDI1_SCHPO1.064e-2748.33Probable secretory pathway GDP dissociation inhibi... [more]
GDIB_BOVIN9.956e-2645.00Rab GDP dissociation inhibitor beta OS=Bos taurus ... [more]
GDIB_PIG1.300e-2545.00Rab GDP dissociation inhibitor beta OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06J16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621358 ID=DN621358; Name=DN621358; organism=Citrus sinensis; type=EST; length=632bp
TTTTTTTTTTTTTTTTGATGCATGTTTGAAATCTACACATTAGTTCCCAC
GGCGAACAATTAAAACAAGATTCCATTACATAATAATAATAATAAAATCA
CCAACTATGAGAAACAGAAACCATGACAAAGTCCAAGTGTCCAACCCCCA
CATTCTTTCGAGCTTTATCCCACTGACGGCATTACATGCGCAAACATGAA
CGGGGAGTTGCAGATTCCTCATTCTTCTGCAGCACTGGCAGCACTTAAAT
CCACACTGAGGTCAAGAACCTTTCCGGTTATCATGGTATACATGTTCAGT
ACATCCGTGACAGTTGACTCAAAGTGTGTTGTGGCATCATAGCTCGTTGA
GATAAAGCAATTGTCCAAAGAAGGTTCATTAACTGGTTCATATCTGTCAT
ATATATCATAGAATATTTCATCGACTGGACCCAAAAGATCAATTCCAGGC
TTAAGTTCAGTCTGTGGATGATCAGTCTCTGCCTCAGTCGATACGAATGC
AATGAATTTGCCCTTTGGAGCAACATTGTGGGAGTAGGAACAACAGAAGA
GGTACATGTCTGATCTACGACCCAACTGTTTTTGCGGAAGGATAACCTGC
ACTGAATGGGAATCATTGGTGTTTGGGATTGG
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