DN621351

Overview
NameDN621351
Unique NameDN621351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621351 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.922e-14
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = -1
Query:  334 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 474
            F+GD+ S+IFDA AGI LS KFVKLV+WYDNE+GYSTRVVDL+ H++
Sbjct:  283 FLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 329          
BLAST of DN621351 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.035e-13
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 474
            F GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  284 FNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of DN621351 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.035e-13
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 474
            F GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  284 FNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333          
BLAST of DN621351 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.351e-13
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 474
            F GD+ SSIFDA AGIAL++ FVKLVSWYDNE GYS RVVDL+ HM+  +
Sbjct:  284 FNGDTHSSIFDADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333          
BLAST of DN621351 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.351e-13
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = -1
Query:  331 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 474
            F+G+S SSIFDA AGI+L+  FVKLVSWYDNEWGYS R +DL+V M++
Sbjct:  286 FIGNSHSSIFDAAAGISLNNNFVKLVSWYDNEWGYSNRCLDLLVFMAQ 333          
BLAST of DN621351 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.351e-13
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = -1
Query:  331 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 474
            F G++ SSIFDA AGIAL+K FVKL++WYDNEWGYS RVVDLI  +++
Sbjct:  285 FTGNTHSSIFDASAGIALNKNFVKLIAWYDNEWGYSRRVVDLITFVAQ 332          
BLAST of DN621351 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.351e-13
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 474
            F GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  284 FNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of DN621351 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.351e-13
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = -1
Query:  331 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 474
            F+GD+ +SIFDA AGI LS KFVKL+SWYDNE+GYS RVVDLI +++K
Sbjct:  284 FLGDTHASIFDASAGIQLSPKFVKLISWYDNEYGYSARVVDLIEYVAK 331          
BLAST of DN621351 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.351e-13
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = -1
Query:  340 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVH 474
            F GD+ SSIFDA AGI LS +FVKLVSWYDNEWGYS RVVDL+ +
Sbjct:  286 FCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAY 330          
BLAST of DN621351 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.351e-13
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = -1
Query:  325 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 474
            F GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  314 FNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 363          
The following BLAST results are available for this feature:
BLAST of DN621351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
G3P1_KLUMA7.922e-1472.34Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_COTJA1.035e-1372.00Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_COLLI1.035e-1372.00Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3P_XENLA1.351e-1370.00Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_USTMA1.351e-1368.75Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_OMPOL1.351e-1368.75Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_CHICK1.351e-1372.00Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P1_YEAST1.351e-1370.83Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P1_SCHPO1.351e-1375.56Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P1_JACOR1.351e-1372.00Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06J13_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006J13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621351 ID=DN621351; Name=DN621351; organism=Citrus sinensis; type=EST; length=474bp
TTTTTTTTTTTTTTTGAATAACAGCGTGAAGAACAGGTCTTCGATACTAA
CTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCG
CTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGA
AAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTT
GGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACACC
ACATTTAGCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACAT
ACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCA
AATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACA
AGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGAT
ACTTGACCTACTGTCACCAACAAA
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