DN621348

Overview
NameDN621348
Unique NameDN621348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_RAT (40S ribosomal protein S7 OS=Rattus norvegicus GN=Rps7 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.351e-48
Identity = 97/169 (57.40%), Postives = 133/169 (78.70%), Query Frame = -1
Query:  254 VAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 748
            ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:   23 ISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_MOUSE (40S ribosomal protein S7 OS=Mus musculus GN=Rps7 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.351e-48
Identity = 97/169 (57.40%), Postives = 133/169 (78.70%), Query Frame = -1
Query:  254 VAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 748
            ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:   23 ISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_HUMAN (40S ribosomal protein S7 OS=Homo sapiens GN=RPS7 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.351e-48
Identity = 97/169 (57.40%), Postives = 133/169 (78.70%), Query Frame = -1
Query:  254 VAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 748
            ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:   23 ISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_FELCA (40S ribosomal protein S7 OS=Felis catus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.351e-48
Identity = 97/169 (57.40%), Postives = 133/169 (78.70%), Query Frame = -1
Query:  254 VAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 748
            ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:   23 ISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_BOVIN (40S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.351e-48
Identity = 97/169 (57.40%), Postives = 133/169 (78.70%), Query Frame = -1
Query:  254 VAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 748
            ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:   23 ISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_DANRE (40S ribosomal protein S7 OS=Danio rerio GN=rps7 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.751e-48
Identity = 94/169 (55.62%), Postives = 134/169 (79.29%), Query Frame = -1
Query:  254 VAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 748
            ++QAL +LE  N +LK+ L++L+I  A +++V G+RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLT VHDA+LED+V+P+EIVGKR+R +LD S++IK+ LD  ++NN E+K+E+F+GVY+KLTGKDV+F++P
Sbjct:   23 ISQALLELE-MNSDLKAQLRELHITAAKEIEVGGSRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTNVHDAILEDLVFPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVIFEFP 190          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_TAKRU (40S ribosomal protein S7 OS=Takifugu rubripes GN=rps7 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.274e-47
Identity = 95/169 (56.21%), Postives = 134/169 (79.29%), Query Frame = -1
Query:  254 VAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 748
            ++QAL +LE  N +LK+ L++L I  A +++V G+RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLT+VHDA+LED+V+P+EIVGKR+R ++D S++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDVVF++P
Sbjct:   23 ISQALLELE-MNSDLKAQLRELNITAAKEIEVGGSRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRSKNKQKRPRSRTLTSVHDAILEDLVFPSEIVGKRIRVKMDSSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFP 190          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_ANOGA (40S ribosomal protein S7 OS=Anopheles gambiae GN=RpS7 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.557e-45
Identity = 90/169 (53.25%), Postives = 133/169 (78.70%), Query Frame = -1
Query:  254 VAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKG----SAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 748
            + QA+ +LE  N +LK  L+DLYI +A +++ + N+KAI++YVP   +KA++K+ +RLVRELEKKFSGK VV IA RRI+  P +G    +  +RPRSRTLTAV+DA+LED+V+PAE+VGKR+R +LDGS++IK+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:   22 IGQAILELE-MNSDLKPQLRDLYITRAREVEFN-NKKAIIIYVPVPKQKAFQKVQTRLVRELEKKFSGKHVVFIAERRILPKPMRGRRDPNKQKRPRSRTLTAVYDAILEDLVFPAEVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFASVYKKLTGRDVTFEFP 188          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_SCHPO (40S ribosomal protein S7 OS=Schizosaccharomyces pombe GN=rps7 PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 2.033e-45
Identity = 90/168 (53.57%), Postives = 125/168 (74.40%), Query Frame = -1
Query:  251 VAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV--QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPI 748
            VAQ L+DLE++++++  +L+ L I  A +++V G +KAIVV+VP  L KA+ K  +RL RELEKKF+ + V+ IA RRI+  P + S V  +RPRSRTLTAVH+A+LED+V+P EI+GKR R   DG K IK+FLD ++ N  +YKL SFS VY KLTGK+V F++P+
Sbjct:   22 VAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVTQKRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFPV 189          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_CULQU (40S ribosomal protein S7 OS=Culex quinquefasciatus GN=RpS7 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 89/169 (52.66%), Postives = 133/169 (78.70%), Query Frame = -1
Query:  254 VAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKG----SAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 748
            + QA+ +LE  N +LK  L+DL+I +A +++ + N+KAIV+YVP   +KA++K+ +RLVRELEKKFSGK VV I  RRI+  P++G    +  +RPRSRTLTAV+DA+LED+V+PAE+VGKR+R +LDGS++IK+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:   22 IGQAILELE-MNSDLKPQLRDLHITRAREIEFN-NKKAIVIYVPVPKQKAFQKVQTRLVRELEKKFSGKHVVFIGERRILPKPQRGRRDPNKQKRPRSRTLTAVYDAILEDLVFPAEVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188          
The following BLAST results are available for this feature:
BLAST of DN621348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_RAT3.351e-4857.4040S ribosomal protein S7 OS=Rattus norvegicus GN=R... [more]
RS7_MOUSE3.351e-4857.4040S ribosomal protein S7 OS=Mus musculus GN=Rps7 P... [more]
RS7_HUMAN3.351e-4857.4040S ribosomal protein S7 OS=Homo sapiens GN=RPS7 P... [more]
RS7_FELCA3.351e-4857.4040S ribosomal protein S7 OS=Felis catus GN=RPS7 PE... [more]
RS7_BOVIN3.351e-4857.4040S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=... [more]
RS7_DANRE9.751e-4855.6240S ribosomal protein S7 OS=Danio rerio GN=rps7 PE... [more]
RS7_TAKRU1.274e-4756.2140S ribosomal protein S7 OS=Takifugu rubripes GN=r... [more]
RS7_ANOGA1.557e-4553.2540S ribosomal protein S7 OS=Anopheles gambiae GN=R... [more]
RS7_SCHPO2.033e-4553.5740S ribosomal protein S7 OS=Schizosaccharomyces po... [more]
RS7_CULQU7.726e-4552.6640S ribosomal protein S7 OS=Culex quinquefasciatus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06J11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621348 ID=DN621348; Name=DN621348; organism=Citrus sinensis; type=EST; length=751bp
CCTTTTTTTTCTGCAGTAAACAGATCTCACTTCAACTAGAAGACATGATG
TTTCTCAGCTCAACAATTTCACAAAATGAAGAAACAAAAAGAAATTCATA
AAGCTTCATCTGTCCTATGCAAAATGATGTCATACCAAATTTAAGAGTCA
AAATTTTAAATAGTACCCTATCCAAATCAAAATTATAGTGCAACAAAATA
AACAGTGACAAACACAAATGATCGTCTGCAACAACTCTTCAGGCATCTGT
AATTGGATAATCAAAAACCACGTCTTTGCCGGTAAGCTTTCTGTAAACCC
CTGAAAAAGACTCCAACTTGTACTCCGTGTTGTTCCTCTCCTTTGGATCC
AAGAAAATCTTGATTATTTTGGATCCATCGAGACGGTATCTGACACGTTT
TCCAACAATCTCAGCTGGGTAAACTACATCTTCAAGCATGGCATCATGAA
CAGCTGTGAGTGTGCGACTGCGAGGTCTCTGAACAGCAGAGCCTTTCTTT
GGTGGCCTGACTATCCTTCGGGTGGCAATGAGTACAACATCCTTGCCACT
GAATTTCTTCTCCAGCTCTCTCACAAGGCGAGAATGAATCTTCCGATAAG
CCTTCCTCAATCTGTAAGGCACATAGACAACAATTGCCTTGCGGTTTCCA
GAAACATCCATTTGAATGGCTTGATTAATGTAAAGATCTTTCAAGTCACT
TTTAAGCTCCTGGTTGGTATTCTCCAAATCAAACAGTGCCTGGGCAACTG
T
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