DN621348

Overview
NameDN621348
Unique NameDN621348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_CAEEL (40S ribosomal protein S7 OS=Caenorhabditis elegans GN=rps-7 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 90/170 (52.94%), Postives = 127/170 (74.71%), Query Frame = -1
Query:  254 VAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ-----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 748
            V+QAL DLE TN +++S LK+LYI    ++++ GN+ AI++YVP    KA+ KIH  LVRELEKKF G+D++++A RRI+  P++GS  +     RPRSRTLTAVHDA L+++VYPAE+VG+R+R +LDG K+ K+ LD   + N  +K+  F+ VYRKLTGKDV F++P
Sbjct:   23 VSQALIDLE-TNDDVQSQLKELYIVGVKEVEL-GNKSAIIIYVPVPQLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFP 190          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_DICDI (40S ribosomal protein S7 OS=Dictyostelium discoideum GN=rps7 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.542e-44
Identity = 92/168 (54.76%), Postives = 124/168 (73.81%), Query Frame = -1
Query:  257 TVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ---RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDY 751
            TVAQAL DLEN N ELK DLKDL +    ++DV+ ++KA+V++VP+R  K Y KI  +L  E+EKK  GK V+ IA RRI+R P   + ++   RP SRT+ AVHDA+L+D+V+P  IVG+R+RYRLDGSK+ KI+LD KE  +   K++SFS VY KLTGK+VVF++
Sbjct:   20 TVAQALVDLENNNAELK-DLKDLSVCSVKEVDVAESKKAVVIFVPFRQLKNYNKIQQKLTYEVEKKLGGKQVMFIAQRRIIRKPASNNKIKMQKRPISRTIKAVHDAILDDLVFPNTIVGRRLRYRLDGSKLHKIYLDRKEMLSNISKVDSFSAVYHKLTGKEVVFEF 186          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_SPOFR (40S ribosomal protein S7 OS=Spodoptera frugiperda GN=RpS7 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.485e-43
Identity = 88/170 (51.76%), Postives = 132/170 (77.65%), Query Frame = -1
Query:  254 TVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 751
            +++QAL +LE TN +LK+ L++LYI +A ++++  N+K+I++YVP    KA++KI  RLVRELEKKFSGK VV I  R+I+  P   + V    +RPRSRTLT+V+DA+LED+V+PAEIVGKR+R +LDGS++IK+ LD  ++   E+K+++F  VY+KLTG++V F++P
Sbjct:   19 SISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFIGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRIKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 186          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_MANSE (40S ribosomal protein S7 OS=Manduca sexta GN=RpS7 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.485e-43
Identity = 88/170 (51.76%), Postives = 132/170 (77.65%), Query Frame = -1
Query:  254 TVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 751
            +++QAL +LE TN +LK+ L++LYI +A ++++  N+K+I++YVP    KA++KI  RLVRELEKKFSGK VV I  R+I+  P   + V    +RPRSRTLT+V+DA+LED+V+PAEIVGKR+R +LDGS++IK+ LD  ++   E+K+++F  VY+KLTG++V F++P
Sbjct:   19 SISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFIGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 186          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_NEUCR (40S ribosomal protein S7 OS=Neurospora crassa GN=rps-7 PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 4.239e-43
Identity = 86/175 (49.14%), Postives = 127/175 (72.57%), Query Frame = -1
Query:  242 VAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ------RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA 748
            VA AL+DLE+   +LK+ L+ L    A +++V   +KAIV++VP    + + ++  RL RELEKKFS + V+++A+RRI+  PK+ S  +      RPRSRTLTAVHDA+L D+VYP EIVGKR+R + DGSK +K+ LD KER + +Y+L+++S VYR+LTGK+V+F++P+  A
Sbjct:   26 VAGALYDLESNTADLKAALRPLQFVSAREIEVGHGKKAIVIFVPVPSLQGFHRVQQRLTRELEKKFSDRHVLIVASRRILPRPKRSSRSRNTLKQKRPRSRTLTAVHDAILTDLVYPVEIVGKRLRVKEDGSKTLKVILDEKERGSVDYRLDTYSAVYRRLTGKNVLFEFPLVSA 200          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7B_YEAST (40S ribosomal protein S7-B OS=Saccharomyces cerevisiae GN=RPS7B PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.231e-43
Identity = 87/167 (52.10%), Postives = 119/167 (71.26%), Query Frame = -1
Query:  254 VAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 748
            VA+   DLE+++ ELK+DL+ L I    ++DV+G +KA+V++VP     AY K+ ++L RELEKKF  + V+ +A RRI+  P + S    +RPRSRTLTAVHD +LED+V+P EIVGKRVRY + G+KI K+ LD K+    +YKLESF  VY KLTGK +VF+ P
Sbjct:   20 VAKTFIDLESSSPELKADLRPLQIKSIREIDVTGGKKALVLFVPVPALSAYHKVQTKLTRELEKKFPDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKVLEDMVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 186          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_DROME (40S ribosomal protein S7 OS=Drosophila melanogaster GN=RpS7 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.611e-42
Identity = 87/170 (51.18%), Postives = 132/170 (77.65%), Query Frame = -1
Query:  254 TVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSA----VQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 751
            ++AQAL +LE  N +LK  L+DL+I +A +++  G++KA+++YVP   +K ++KI   LVRELEKKFSGK VV+IA R+I+  P + +      +RPRSRTLTAV+DA+LED+V+PAEIVGKR+R +LDGS+++K+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:   21 SIAQALVELE-ANSDLKPYLRDLHITRAREIEF-GSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIAERKILPKPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7_DROYA (40S ribosomal protein S7 OS=Drosophila yakuba GN=RpS7 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.687e-42
Identity = 86/170 (50.59%), Postives = 131/170 (77.06%), Query Frame = -1
Query:  254 TVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSA----VQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 751
            ++AQAL +LE  N +LK  L+DL+I +A +++  G++KA+++YVP   +K ++KI   LVRELEKKFSGK VV+I  R+I+  P + +      +RPRSRTLTAV+DA+LED+V+PAEIVGKR+R +LDGS+++K+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:   21 SIAQALVELE-ANSDLKPYLRDLHITRAREIEF-GSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIGERKILPKPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188          
BLAST of DN621348 vs. ExPASy Swiss-Prot
Match: RS7A_YEAST (40S ribosomal protein S7-A OS=Saccharomyces cerevisiae GN=RPS7A PE=1 SV=4)

HSP 1 Score: 169.859 bits (429), Expect = 1.364e-41
Identity = 84/167 (50.30%), Postives = 117/167 (70.06%), Query Frame = -1
Query:  254 VAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 748
            VAQA  +LEN++ ELK++L+ L      ++DV+G +KA+ ++VP      + K+ ++L RELEKKF  + V+ +A RRI+  P + S    +RPRSRTLTAVHD +LED+V+P EIVGKRVRY + G+KI K+ LD K+    +YKLESF  VY KLTGK +VF+ P
Sbjct:   20 VAQAFVELENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 186          
The following BLAST results are available for this feature:
BLAST of DN621348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_CAEEL7.726e-4552.9440S ribosomal protein S7 OS=Caenorhabditis elegans... [more]
RS7_DICDI8.542e-4454.7640S ribosomal protein S7 OS=Dictyostelium discoide... [more]
RS7_SPOFR2.485e-4351.7640S ribosomal protein S7 OS=Spodoptera frugiperda ... [more]
RS7_MANSE2.485e-4351.7640S ribosomal protein S7 OS=Manduca sexta GN=RpS7 ... [more]
RS7_NEUCR4.239e-4349.1440S ribosomal protein S7 OS=Neurospora crassa GN=r... [more]
RS7B_YEAST7.231e-4352.1040S ribosomal protein S7-B OS=Saccharomyces cerevi... [more]
RS7_DROME1.611e-4251.1840S ribosomal protein S7 OS=Drosophila melanogaste... [more]
RS7_DROYA4.687e-4250.5940S ribosomal protein S7 OS=Drosophila yakuba GN=R... [more]
RS7A_YEAST1.364e-4150.3040S ribosomal protein S7-A OS=Saccharomyces cerevi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06J11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621348 ID=DN621348; Name=DN621348; organism=Citrus sinensis; type=EST; length=751bp
CCTTTTTTTTCTGCAGTAAACAGATCTCACTTCAACTAGAAGACATGATG
TTTCTCAGCTCAACAATTTCACAAAATGAAGAAACAAAAAGAAATTCATA
AAGCTTCATCTGTCCTATGCAAAATGATGTCATACCAAATTTAAGAGTCA
AAATTTTAAATAGTACCCTATCCAAATCAAAATTATAGTGCAACAAAATA
AACAGTGACAAACACAAATGATCGTCTGCAACAACTCTTCAGGCATCTGT
AATTGGATAATCAAAAACCACGTCTTTGCCGGTAAGCTTTCTGTAAACCC
CTGAAAAAGACTCCAACTTGTACTCCGTGTTGTTCCTCTCCTTTGGATCC
AAGAAAATCTTGATTATTTTGGATCCATCGAGACGGTATCTGACACGTTT
TCCAACAATCTCAGCTGGGTAAACTACATCTTCAAGCATGGCATCATGAA
CAGCTGTGAGTGTGCGACTGCGAGGTCTCTGAACAGCAGAGCCTTTCTTT
GGTGGCCTGACTATCCTTCGGGTGGCAATGAGTACAACATCCTTGCCACT
GAATTTCTTCTCCAGCTCTCTCACAAGGCGAGAATGAATCTTCCGATAAG
CCTTCCTCAATCTGTAAGGCACATAGACAACAATTGCCTTGCGGTTTCCA
GAAACATCCATTTGAATGGCTTGATTAATGTAAAGATCTTTCAAGTCACT
TTTAAGCTCCTGGTTGGTATTCTCCAAATCAAACAGTGCCTGGGCAACTG
T
back to top