DN621335

Overview
NameDN621335
Unique NameDN621335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  402 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSE-DKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPLL 683
            +SDV+S GVV+LELLTGR+P D T PRG Q+L  WA PRL + D + + VDP L G Y               +Q E  FRP +S +V+ LQ ++
Sbjct:  674 QSDVFSLGVVMLELLTGRRPFDRTRPRGHQTLAQWAIPRLHDIDALTRMVDPSLHGAYPMKSLSRFADIISRSLQMEPGFRPPISEIVQDLQHMI 768          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = -2
Query:  405 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSE-DKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPL 683
            KSDVYSFGVV LEL+TGRK +D  MP G+Q+LV WA P  ++  K  +  DP+LKG +             +C+Q +A  RP ++ VV AL  L
Sbjct:  270 KSDVYSFGVVFLELITGRKAIDSEMPHGEQNLVAWARPLFNDRRKFIKLADPRLKGRFPTRALYQALAVASMCIQEQAATRPLIADVVTALSYL 363          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = -2
Query:  405 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRL-SEDKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPL 683
            KSDVYSFGVVLLELL+GR+ +D   P G+ +LV WA P L ++ ++ + +DP+L+G+Y              C+  +A+ RP M+ +VK ++ L
Sbjct:  260 KSDVYSFGVVLLELLSGRRAIDKNQPVGEHNLVDWARPYLTNKRRLLRVMDPRLQGQYSLTRALKIAVLALDCISIDAKSRPTMNEIVKTMEEL 353          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = -2
Query:  360 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRL-SEDKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPL---LKSPPPAAPVSET*K 683
            +SDVYSFGV+LLE+L+G++ +DH  P  +++LV WA P L S+ KV   VD +L  +Y              C+ +E + RP M  VV+ALQ L   L  P    PV +T K
Sbjct:  259 RSDVYSFGVLLLEILSGKRALDHNRPAKEENLVDWARPYLTSKRKVLLIVDNRLDTQYLPEEAVRMASVAVQCLSFEPKSRPTMDQVVRALQQLQDNLGKPSQTNPVKDTKK 370          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 48/110 (43.64%), Postives = 63/110 (57.27%), Query Frame = -2
Query:  360 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDK-VKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPLLKSP-PPAAPVSET*K 683
            KSD+YSFGVVLLEL+TGRK +D+T  R  Q+LV WA P   + +   + VDP L+G+Y             +CVQ +   RP +S VV AL  L  S   P +P S + K
Sbjct:  287 KSDIYSFGVVLLELITGRKAIDNTKTRKDQNLVGWARPLFKDRRNFPKMVDPLLQGQYPVRGLYQALAISAMCVQEQPTMRPVVSDVVLALNFLASSKYDPNSPSSSSGK 396          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 44/97 (45.36%), Postives = 55/97 (56.70%), Query Frame = -2
Query:  396 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRL-SEDKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPLLKS 683
            +SDVYSFGVVLLELL GR+ +DH  P  +Q+LV WA P L S  KV   VD +L  +Y              C+ +E + RP M  VV+AL  L  S
Sbjct:  254 RSDVYSFGVVLLELLCGRQALDHNRPAKEQNLVDWARPYLTSRRKVLLIVDTRLNSQYKPEGAVRLASIAVQCLSFEPKSRPTMDQVVRALVQLQDS 350          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: SRF2_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = -2
Query:  399 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDK-VKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPLLK 683
            KSD Y+ GV+LLELLTGRK  D + PRG+Q LV WA+ RL + + ++Q +D  + G +             LC Q E EFRP +S +V+AL  L++
Sbjct:  601 KSDTYALGVLLLELLTGRKAFDSSRPRGEQLLVKWASTRLHDRRSLEQMIDGGIAGTFSSRVASQYADIISLCTQAEKEFRPPVSEIVEALTALIQ 696          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = -2
Query:  411 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRL-SEDKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQ 683
            KSDVYSFGVVLLELL+GR+ VD   P G+++LV WA P L ++ K+ + +D +L+ +Y              C+  E + RPNMS VV  L+
Sbjct:  260 KSDVYSFGVVLLELLSGRRAVDKNRPSGERNLVEWAKPYLVNKRKIFRVIDNRLQDQYSMEEACKVATLSLRCLTTEIKLRPNMSEVVSHLE 351          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = -2
Query:  411 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRL-SEDKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQ 683
            KSDVYS+GVVLLE+L+GR+ VD   P G+Q LV WA P L ++ K+ + +D +L+ +Y              C+ +E + RPNM+ VV  L+
Sbjct:  261 KSDVYSYGVVLLEVLSGRRAVDKNRPPGEQKLVEWARPLLANKRKLFRVIDNRLQDQYSMEEACKVATLALRCLTFEIKLRPNMNEVVSHLE 352          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = -2
Query:  390 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSED-KVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPLLKSPP 683
            KSDVYSFGVVLLELL+GR+ VD +    +QSLV WATP L +  K+ + +D +L G+Y              C+  +A+ RP MS V+  L  L  + P
Sbjct:  273 KSDVYSFGVVLLELLSGRRAVDKSKVGMEQSLVDWATPYLGDKRKLFRIMDTRLGGQYPQKGAYTAASLALQCLNPDAKLRPKMSEVLAKLDQLESTKP 371          
The following BLAST results are available for this feature:
BLAST of DN621335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SUB_ARATH5.370e-1545.26Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
PBS1_ARATH1.196e-1445.74Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
NAK_ARATH1.196e-1441.49Probable serine/threonine-protein kinase NAK OS=Ar... [more]
BIK1_ARATH2.665e-1441.07Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
RLCK7_ARATH4.546e-1443.64Probable serine/threonine-protein kinase RLCKVII O... [more]
Y3545_ARATH1.013e-1345.36Probable receptor-like protein kinase At3g55450 OS... [more]
SRF2_ARATH1.013e-1343.75Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsi... [more]
APK1A_ARATH1.323e-1344.57Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
APK1B_ARATH3.848e-1342.39Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
APK2B_ARATH5.026e-1343.43Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06J04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621335 ID=DN621335; Name=DN621335; organism=Citrus sinensis; type=EST; length=684bp
TTTTTAATAAAATCAAATCAAATAAACAATATAAGTTGAGTCCAGAGAGA
AAAGAAATCAAACAAATACTCAGAACAAATATATCCACCACACAACCCAA
TCCAATTGTTAACTTAAAAACCCAAGGCCGACAGTACCATGGTGTCATAC
CAGTTGCAGACATTTTAAGTATCGACGACACTTCGGTACAAATCCAATCC
TAAAAATCTGCTCTCTTATACGAAATCAAATCTCATATACGAAAAATTAA
AAAAATATATATATATAAAAGTGATTTGCAGAAATATGGAGGCATATGAA
ACAAACTGTAACCAAGCTGCAAGAAACTTCAAGCTAGCAGCGGAACTAAA
TTCTTTTGCCTTTTAAGTCTCTGAAACTGGGGCTGCTGGAGGGGGAGATT
TCAGAAGAGGTTGAAGAGCCTTGACAACAATGCTCATATTTGGCCGGAAT
TCCGCTTCATACTGCACACATAATGCTGCTACTGCAGCCAACTTAGCAAC
TCCTTTGGGTGGATATTCACCCTTAAGCTTTGGGTCTACACATTGCTTAA
CTTTGTCTTCACTCAATCTTGGAGTAGCCCAGGTAACAAGACTCTGTTGT
CCACGAGGCATGGTGTGATCAACAGGTTTCCTCCCAGTAAGGAGCTCTAG
AAGGACAACCCCAAAGCTATACACGTCACTTTTC
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