DN621292

Overview
NameDN621292
Unique NameDN621292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length347
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN621292 vs. ExPASy Swiss-Prot
Match: HTPG_SHEAM (Chaperone protein htpG OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=htpG PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.634e-11
Identity = 34/85 (40.00%), Postives = 56/85 (65.88%), Query Frame = 2 
Query:    2 AYLVAEKVIV---TAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLW 247
            A++VA++V V    A H+ DE   WES+  G+F+V   T  E   RGTKI LHL++++ E+ ++ RL+ +I K+S+ IS P+ ++
Sbjct:  130 AFIVAKRVEVFTRAAGHSADEGVKWESEGEGNFSVETITKAE---RGTKIVLHLRDEEKEFADDWRLRSIITKYSDHISIPVEMY 211
[Close]
BLAST of DN621292 vs. ExPASy Swiss-Prot
Match: HTPG_DESVH (Chaperone protein htpG OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=htpG PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.634e-11
Identity = 32/80 (40.00%), Postives = 54/80 (67.50%), Query Frame = 2 
Query:    5 YLVAEKVIVTAKH--NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPI 238
            ++VA++V VT++     +  + W S   G FTV  + +G++  RGT I  HL+ED  E+LE+ R++ +++KHS+FIS+PI
Sbjct:  136 FMVADRVEVTSRSYIEGEAAHTWTSDGLGEFTV-EEATGDIPQRGTVIKAHLREDAAEFLEKYRIEGILRKHSQFISFPI 214
The following BLAST results are available for this feature:
BLAST of DN621292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
HTPG_SHEAM9.634e-1140.00Chaperone protein htpG OS=Shewanella amazonensis (... [more]
HTPG_DESVH9.634e-1140.00Chaperone protein htpG OS=Desulfovibrio vulgaris (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06I06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621292 ID=DN621292; Name=DN621292; organism=Citrus sinensis; type=EST; length=347bp
AGCTTACTTGGTTGCTGAGAAGGTTATTGTTACCGCCAAGCACAACGATG
ATGAGCAGTACATCTGGGAGTCTCAGGCCGGTGGATCATTCACTGTTACC
AGGGACACTTCTGGTGAGCTTCTTGGCCGCGGTACAAAGATCACTCTCCA
CCTCAAGGAAGACCAACTTGAGTACCTTGAGGAGCGCCGTTTGAAGGATT
TGATTAAGAAGCACTCTGAGTTCATTAGTTACCCAATTTCCCTCTGGATT
GAGAAGACCACTGAGAAGGAGATTTCTGATGATGAGGACGAGGAAGAAAA
GAAAGATGAGGAGGGTAAAGTTGAGGATGTTGATGAAGAGAAAGAGA
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