DN621284

Overview
NameDN621284
Unique NameDN621284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.825e-31
Identity = 66/113 (58.41%), Postives = 84/113 (74.34%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            SF  MG++++LLRG+Y YGFEKPSAIQQR ++P   G DVI QAQSGTGKT+     + Q +D    + QAL+L+PTRELA Q EKV+ A+GDY+ V+ HAC+GG SV ED R
Sbjct:   19 SFAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQTEKVILAIGDYINVQAHACIGGKSVGEDIR 131          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.066e-31
Identity = 66/119 (55.46%), Postives = 87/119 (73.11%), Query Frame = 2
Query:  227 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            ++YD V   FD + L+ N++RGI+ YG+E PSAIQQR I+P  +G DV+ QAQSGTGKTATF    LQ++D      QAL+LAPTRELA QI+ V+ ++G YL V VHA +GGTS+ +D
Sbjct:   16 SNYDNVVYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMSDD 134          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_ASHGO (ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.066e-31
Identity = 69/114 (60.53%), Postives = 83/114 (72.81%), Query Frame = 2
Query:  242 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            V  +F++M LQENLLRGIY YGFE PSAIQ R I    +G DVI QAQSGTGKTATF  G+LQ +D      QALVL+PTRELA QI +V+R LGDY+ V   AC GG ++++D
Sbjct:   21 VSPTFESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQVIDSSSKDLQALVLSPTRELAAQISQVVRNLGDYMNVVALACTGGKALQQD 134          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.310e-31
Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 2
Query:  227 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            T+YD V   FD + L+ N++RGI+ YG+E PSAIQQR I+P  +G DV+ QAQSGTGKTATF    LQ+++      QAL+LAPTRELA QI+ V+ A+G YL V VHA +GGTS+ +D
Sbjct:   16 TNYDNVVYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINENEKATQALILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDD 134          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.935e-31
Identity = 65/115 (56.52%), Postives = 86/115 (74.78%), Query Frame = 2
Query:  239 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            +V+ +F++M L+  LL+GIYAYGFE PSAIQ R I+    G D I QAQSGTGKTATF  G+L+ LD    +CQALVL+PTRELA QI+ V++ LGDY+ ++ +AC+GG +V  D
Sbjct:   23 KVHRTFESMRLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVLDSKSKECQALVLSPTRELATQIQNVIKHLGDYMNIQTYACIGGKNVGTD 137          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.442e-30
Identity = 63/117 (53.85%), Postives = 85/117 (72.65%), Query Frame = 2
Query:  239 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            E   SF+ MG++E++LRG+Y YGFEKPSAIQQR ++P  +G DVI QAQSGTGKT+     + Q +D    + QAL+L+PTRELA Q EK ++A+G +  ++ HAC+GG SV ED R
Sbjct:   32 EPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIR 148          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_CANGA (ATP-dependent RNA helicase FAL1 OS=Candida glabrata GN=FAL1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.308e-29
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            +F++M L+E LLRGIY+YGFE PSAIQ R I     G DVI QAQSGTGKTATF  G+LQ +D      QALVL+PTRELA QI KV+  LGDY+ VK +A  GG ++++D
Sbjct:   24 TFESMDLKEGLLRGIYSYGFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQAIDLKKHDLQALVLSPTRELAAQIGKVVTNLGDYMNVKAYAMTGGKTMKDD 134          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.708e-29
Identity = 66/115 (57.39%), Postives = 82/115 (71.30%), Query Frame = 2
Query:  239 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            +V  +F++M L+ +LLRGIY YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +D    + QALVL+PTRELA Q E V+  LGDYL V  HAC GG ++++D
Sbjct:   20 KVSATFESMNLKPDLLRGIYFYGFEYPSSIQSRAISQIISGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQD 134          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.491e-29
Identity = 63/115 (54.78%), Postives = 83/115 (72.17%), Query Frame = 2
Query:  239 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            ++  +F++M L+++LLRGIY YGFE PSAIQ R I     G DVI QAQSGTGKTATF  G+LQ +D      QALVL+PTRELA QI +V+  LGDY+ V+ +A  GG ++++D
Sbjct:   20 KISPTFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYMNVQSYAMTGGKTMKDD 134          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.107e-28
Identity = 62/115 (53.91%), Postives = 83/115 (72.17%), Query Frame = 2
Query:  239 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            +V  +F++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +D      QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D
Sbjct:   20 KVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDD 134          
The following BLAST results are available for this feature:
BLAST of DN621284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
IF4A3_NICPL1.825e-3158.41Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]
IF4A_LODEL4.066e-3155.46ATP-dependent RNA helicase eIF4A OS=Lodderomyces e... [more]
FAL1_ASHGO4.066e-3160.53ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii... [more]
IF4A_CANAL5.310e-3156.30ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
FAL1_LODEL6.935e-3156.52ATP-dependent RNA helicase FAL1 OS=Lodderomyces el... [more]
RH2_ARATH3.442e-3053.85DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
FAL1_CANGA1.308e-2959.46ATP-dependent RNA helicase FAL1 OS=Candida glabrat... [more]
FAL1_KLULA1.708e-2957.39ATP-dependent RNA helicase FAL1 OS=Kluyveromyces l... [more]
FAL1_VANPO6.491e-2954.78ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
FAL1_YEAST1.107e-2853.91ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06I02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621284 ID=DN621284; Name=DN621284; organism=Citrus sinensis; type=EST; length=594bp
CGCAGATCCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCA
ATCTTCTCCTTCTCTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGAT
TTTAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGA
AGGATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGC
TCTCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGAC
AGTTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGC
CTATGGGTTTGAGAAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCT
TCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAA
ACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGT
CCAATGTCAGGCCCTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGA
TTGAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCAT
GCTTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCT
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