DN621284

Overview
NameDN621284
Unique NameDN621284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.107e-28
Identity = 62/115 (53.91%), Postives = 83/115 (72.17%), Query Frame = 2
Query:  239 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            +V  +F++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +D      QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D
Sbjct:   20 KVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDD 134          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_LEIBR (Probable eukaryotic initiation factor 4A OS=Leishmania braziliensis GN=LbrM01_V2.0740 PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.446e-28
Identity = 66/116 (56.90%), Postives = 82/116 (70.69%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC---VGGTSVREDQR 589
            SFD M L +NLLRGIY+YGFEKPS+IQQR I PF +G D+I QAQSGTGKT  F  G+LQ+LD+     Q LVL+PTRELA Q  +V+  +G++L      C   VGGT V++D R
Sbjct:   27 SFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSAKFCETFVGGTRVQDDLR 142          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.467e-28
Identity = 66/116 (56.90%), Postives = 82/116 (70.69%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC---VGGTSVREDQR 589
            SFD M L +NLLRGIY+YGFEKPS+IQQR I PF +G D+I QAQSGTGKT  F  G+LQ+LD+     Q LVL+PTRELA Q  +V+  +G++L      C   VGGT V++D R
Sbjct:   27 SFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLR 142          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.467e-28
Identity = 66/116 (56.90%), Postives = 82/116 (70.69%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC---VGGTSVREDQR 589
            SFD M L +NLLRGIY+YGFEKPS+IQQR I PF +G D+I QAQSGTGKT  F  G+LQ+LD+     Q LVL+PTRELA Q  +V+  +G++L      C   VGGT V++D R
Sbjct:   27 SFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLR 142          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 57/111 (51.35%), Postives = 79/111 (71.17%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            SFD MG+ + +LRG+Y YG++KPS IQQR +VP  KG DVI QAQSGTGKT+     + Q ++    + Q LVL+P+RELA Q EK ++A+G +  ++ HAC+GG S+ ED
Sbjct:   23 SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGED 133          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.088e-27
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA----CVGGTSVREDQR 589
            SFD M L +NLLRGIY++GFEKPS+IQQR IVPF +G D+I QAQSGTGKT  F  G+LQ+LD+     Q LVL+PTRELA Q  +V+  +G++L     +     VGGT V++D R
Sbjct:   27 SFDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELAMQTAEVITRIGEFLAEGSSSFCATFVGGTRVQDDYR 143          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_TRYCR (Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi GN=Tc00.1047053511585.190 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.652e-27
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK----VHACVGGTSVREDQR 589
            SFD M L +NLLRGIY++GFEKPS+IQQR IVPF +G D+I QAQSGTGKT  F  G+LQ+LD+     Q LVL+PTRELA Q  +V+  +G++L           VGGT V++D R
Sbjct:   27 SFDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELALQTAEVITRIGEFLAEGNSSFCATFVGGTRVQDDYR 143          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A2_ORYSJ (Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica GN=Os02g0221300 PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.954e-25
Identity = 63/155 (40.65%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  128 DMAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 592
            D   +AP     ++++  T   ++++T G  F               + E+L+        +KPSA+ QRGIVP C GLD+IQQ+  GT  T T C GILQ+LDY   +CQALVL PT +LA + + V+  LG +L  K HA  GGTS  EDQ+I
Sbjct:   24 DSNSIAPSAIAINSKKKQTT-KDIVTTQGAQF---------------ISESLIGETQTKDLDKPSAVHQRGIVPLCNGLDIIQQSLFGT--TVTLCCGILQRLDYASTECQALVLVPTHDLAHETQNVIGVLGQFLSAKAHAFCGGTSAHEDQQI 160          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_PHANO (ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria nodorum GN=FAL1 PE=3 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 6.287e-24
Identity = 63/125 (50.40%), Postives = 75/125 (60.00%), Query Frame = 2
Query:  218 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            +F TS +  V  +F+AM L+ENLLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ                          V+  LGDY+ V+ HAC+GGT+V ED R
Sbjct:   14 EFSTSKEVTVAPTFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISILQS-------------------------VIMGLGDYMNVQCHACIGGTNVGEDIR 113          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.814e-21
Identity = 53/111 (47.75%), Postives = 73/111 (65.77%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            SF+   L+  LL GI+  GFEKPS IQ+  I     G DV+ +A++GTGKTA+F    LQQ+   L + QAL+L PTRELA Q  +V+R LG +LG++     GGTS+++D
Sbjct:   31 SFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDVLARAKNGTGKTASFIIPSLQQIKPKLNKIQALILVPTRELALQTSQVVRTLGKHLGIQCMVTTGGTSLKDD 141          
The following BLAST results are available for this feature:
BLAST of DN621284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
FAL1_YEAS71.107e-2853.91ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
IF4A_LEIBR1.446e-2856.90Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIMA2.467e-2856.90Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIIN2.467e-2856.90Probable eukaryotic initiation factor 4A OS=Leishm... [more]
RH34_ARATH1.224e-2751.35DEAD-box ATP-dependent RNA helicase 34 OS=Arabidop... [more]
IF4A_TRYBB2.088e-2755.56Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF4A_TRYCR4.652e-2755.56Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF4A2_ORYSJ1.954e-2540.65Putative eukaryotic initiation factor 4A-2 OS=Oryz... [more]
FAL1_PHANO6.287e-2450.40ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria n... [more]
DHH1_PICST3.814e-2147.75ATP-dependent RNA helicase DHH1 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06I02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621284 ID=DN621284; Name=DN621284; organism=Citrus sinensis; type=EST; length=594bp
CGCAGATCCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCA
ATCTTCTCCTTCTCTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGAT
TTTAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGA
AGGATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGC
TCTCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGAC
AGTTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGC
CTATGGGTTTGAGAAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCT
TCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAA
ACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGT
CCAATGTCAGGCCCTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGA
TTGAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCAT
GCTTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCT
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