DN621284

Overview
NameDN621284
Unique NameDN621284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: SUB2_EMENI (ATP-dependent RNA helicase sub2 OS=Emericella nidulans GN=sub2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 54/136 (39.71%), Postives = 70/136 (51.47%), Query Frame = 2
Query:  185 KMNELLSTDGQ-DFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVRED 583
            K  EL  T G+ D   SY  ++ + F    L+  LLR I   GFE PS +QQ  I      +DV+ QA+SG GKTA F    L QL+    +C  LV+  TRELA QI+        YL  VK     GGT +++D
Sbjct:   36 KDGELTVTGGRADKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKD 171          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: DRS1_NEUCR (ATP-dependent RNA helicase drs-1 OS=Neurospora crassa GN=drs-1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 47/136 (34.56%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  179 DTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR 577
            + KM E  + + ++      E+  SF  M L   +LRG+ + GF KP+ IQ + I     G DV+  A +G+GKTA F   IL++L Y    +   + ++L PTRELA Q   V   L  +  +K    VGG S++
Sbjct:  271 EAKMKEFFAPEEENQPKKKGEM-SSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLK 405          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: DRS1_DEBHA (ATP-dependent RNA helicase DRS1 OS=Debaryomyces hansenii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 46/161 (28.57%), Postives = 85/161 (52.80%), Query Frame = 2
Query:  125 ADMAGLAPEGSQFDARQYDTKMNELLS--TDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQR 589
            ADM    P   Q D +  +    ++     D ++  T+  +++ +F ++ L   +L+G+   G+ KPS IQ   I     G D++  A +G+GKTA +   I+++L Y    +   + +VLAPTRELA Q+  V + +G ++  +     VGG ++R+ ++
Sbjct:  215 ADMDEEYPGSDQEDEKPVEDTAEDMAEFYADEEEATTAKKQLHTTFQSLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLYKPAKISSTRVIVLAPTRELAIQVCDVGKKIGQFVNNLNFGLAVGGLNLRQQEQ 375          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG-VKVHACVGGTS 571
            +F  + +   +LR I   G+E P+AIQ   I     G DV+  AQ+GTGKTA F   +L ++D      QALVL PTRELA Q+ +     G YL  + V    GG+S
Sbjct:   14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSS 121          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: DDX49_DICDI (Probable ATP-dependent RNA helicase ddx49 OS=Dictyostelium discoideum GN=ddx49 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGG 565
            +F+ +GL   L+      GF+ PS IQ   I    KG D+I  A++G+GKTA+F   IL QL        A++L PTRELA QI +   A+G  + V     +GG
Sbjct:    5 TFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGG 109          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: DDX19_DROME (DEAD-box helicase Dbp80 OS=Drosophila melanogaster GN=Dbp80 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRI 592
            +F+A+ L+ +LL+GIYA GF  PS IQ+  +         ++I Q+QSGTGKTA F   +L +++  L   Q L L+PT ELA Q  +V   +G +   +K+   V G  V   ++I
Sbjct:   74 TFEALHLKASLLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVNVCLNHPQVLCLSPTYELAIQTGEVAARMGQFCREIKLRFAVRGEEVDRSKKI 190          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: DBP10_COCIM (ATP-dependent RNA helicase DBP10 OS=Coccidioides immitis GN=DBP10 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 2
Query:  254 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRE 580
            F AMGL  NLL+ I   GF  P+ IQ++ I       DV+  A++G+GKTA F   ++++L      V  + L+L+P+RELA Q  KV++ LG    +K    VGG S+ E
Sbjct:   83 FQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGSRGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEE 193          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: DBP10_ASPTN (ATP-dependent RNA helicase dbp10 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp10 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 2
Query:  254 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRE 580
            F AMGL  NLL+ I   GF  P+ IQ++ I       DV+  A++G+GKTA F   ++++L         + L+L+P+RELA Q  KV++ LG    +K    VGG S+ E
Sbjct:   91 FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMDDRDVVGMARTGSGKTAAFVIPMIEKLKSHSSKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEE 201          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: RRP3_ASPTN (ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rrp3 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.210e-12
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGG 565
            +F  +G+ ++L       G+  P+ IQ+R I    +G D+I  A++G+GKTA F   +LQ L     Q  +L+LAPTRELAQQI   + ALG  + V+    +GG
Sbjct:   29 TFRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALMDKPQQFHSLILAPTRELAQQIAHTVEALGARISVRCTLLIGG 133          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: RH56_ARATH (DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.210e-12
Identity = 46/104 (44.23%), Postives = 55/104 (52.88%), Query Frame = 2
Query:  269 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVR 577
            L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ++    Q  ALVL  TRELA QI         YL   KV    GG +++
Sbjct:   53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIK 156          
The following BLAST results are available for this feature:
BLAST of DN621284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
SUB2_EMENI5.521e-1239.71ATP-dependent RNA helicase sub2 OS=Emericella nidu... [more]
DRS1_NEUCR5.521e-1234.56ATP-dependent RNA helicase drs-1 OS=Neurospora cra... [more]
DRS1_DEBHA5.521e-1228.57ATP-dependent RNA helicase DRS1 OS=Debaryomyces ha... [more]
DEAD_MYCTU5.521e-1240.74Cold-shock DEAD box protein A homolog OS=Mycobacte... [more]
DDX49_DICDI5.521e-1239.05Probable ATP-dependent RNA helicase ddx49 OS=Dicty... [more]
DDX19_DROME5.521e-1237.61DEAD-box helicase Dbp80 OS=Drosophila melanogaster... [more]
DBP10_COCIM5.521e-1239.64ATP-dependent RNA helicase DBP10 OS=Coccidioides i... [more]
DBP10_ASPTN5.521e-1238.74ATP-dependent RNA helicase dbp10 OS=Aspergillus te... [more]
RRP3_ASPTN7.210e-1239.05ATP-dependent rRNA helicase rrp3 OS=Aspergillus te... [more]
RH56_ARATH7.210e-1244.23DEAD-box ATP-dependent RNA helicase 56 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06I02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621284 ID=DN621284; Name=DN621284; organism=Citrus sinensis; type=EST; length=594bp
CGCAGATCCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCA
ATCTTCTCCTTCTCTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGAT
TTTAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGA
AGGATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGC
TCTCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGAC
AGTTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGC
CTATGGGTTTGAGAAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCT
TCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAA
ACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGT
CCAATGTCAGGCCCTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGA
TTGAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCAT
GCTTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCT
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