DN621284

Overview
NameDN621284
Unique NameDN621284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSV 574
            +F    L  +L++ I   GFE+ + IQ + I       DVI QAQ+GTGKTA F   ++++++      QA+V+APTRELA Q+ + +  +G     KV    GG  +
Sbjct:    4 TFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDI 111          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGG 565
            +F+ +GL E  +      G  KP+ +Q   +     G DV+  AQ+G+GKTA F   IL +L        ALV+ PTRELA Q+ +  +ALG  L ++    VGG
Sbjct:   59 NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGG 163          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: PRP5_CRYNE (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus neoformans GN=PRP5 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLD-----YGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            ++ A GL +  L  I   G+E P++IQ + I     G DVI  A++G+GKT  F   +L+ +       G     A+V++PTRELA QI K  +     L ++   CVGG+S+ ED
Sbjct:  404 NWGAFGLPQGCLDVIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTRELASQIYKECQPFLKVLNIRASCCVGGSSISED 519          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: MAK5_GIBZE (ATP-dependent RNA helicase MAK5 OS=Gibberella zeae GN=MAK5 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 49/137 (35.77%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  209 DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGI------LQQLDYGLVQC--QALVLAPTRELAQQIEKVMRALGDYLGVKVHACV--GGTSVREDQR 589
            DG D+    D    ++ ++ L   ++  I    F KP+ IQ+R I     G DVI +AQ+G+GKT  F  GI      L+  + G+ +    +LVL+PTRELA+Q+   ++AL D L    + CV  GG S+ + QR
Sbjct:  202 DGNDYKDQEDVDMAAWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPEIVAGHDVIGKAQTGSGKTLAF--GIPMVERWLEMQEQGVKRTGPMSLVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQR 336          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: DRS1_PHANO (ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria nodorum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 2
Query:  251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 586
            SF AM L   + +G+ A GF +P+ IQ + I    +G DV+  A++G+GKTA F   IL++L Y    +   +  +  PTRELA Q   V   L  +  +      GG S RE +
Sbjct:  286 SFHAMSLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALLAGGFSSREQE 400          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: DBPA_ECOLI (ATP-independent RNA helicase dbpA OS=Escherichia coli (strain K12) GN=dbpA PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 2
Query:  284 LRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGG 565
            L  +   G+   + +Q   +     G DV  QA++G+GKTA F  G+LQQ+D  L Q QALVL PTRELA Q+   +R L  +L   K+    GG
Sbjct:   15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGG 109          
The following BLAST results are available for this feature:
BLAST of DN621284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
CSHA_BACSU6.104e-1136.11DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
RH36_ARATH7.972e-1137.14DEAD-box ATP-dependent RNA helicase 36 OS=Arabidop... [more]
PRP5_CRYNE7.972e-1136.21Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
MAK5_GIBZE7.972e-1135.77ATP-dependent RNA helicase MAK5 OS=Gibberella zeae... [more]
DRS1_PHANO7.972e-1135.65ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria n... [more]
DBPA_ECOLI7.972e-1141.05ATP-independent RNA helicase dbpA OS=Escherichia c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06I02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621284 ID=DN621284; Name=DN621284; organism=Citrus sinensis; type=EST; length=594bp
CGCAGATCCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCA
ATCTTCTCCTTCTCTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGAT
TTTAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGA
AGGATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGC
TCTCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGAC
AGTTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGC
CTATGGGTTTGAGAAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCT
TCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAA
ACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGT
CCAATGTCAGGCCCTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGA
TTGAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCAT
GCTTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCT
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