DN621284
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11 Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 2 Query: 251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSV 574 +F L +L++ I GFE+ + IQ + I DVI QAQ+GTGKTA F ++++++ QA+V+APTRELA Q+ + + +G KV GG + Sbjct: 4 TFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDI 111
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11 Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 2 Query: 251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGG 565 +F+ +GL E + G KP+ +Q + G DV+ AQ+G+GKTA F IL +L ALV+ PTRELA Q+ + +ALG L ++ VGG Sbjct: 59 NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGG 163
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: PRP5_CRYNE (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus neoformans GN=PRP5 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11 Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 2 Query: 251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLD-----YGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583 ++ A GL + L I G+E P++IQ + I G DVI A++G+GKT F +L+ + G A+V++PTRELA QI K + L ++ CVGG+S+ ED Sbjct: 404 NWGAFGLPQGCLDVIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTRELASQIYKECQPFLKVLNIRASCCVGGSSISED 519
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: MAK5_GIBZE (ATP-dependent RNA helicase MAK5 OS=Gibberella zeae GN=MAK5 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11 Identity = 49/137 (35.77%), Postives = 74/137 (54.01%), Query Frame = 2 Query: 209 DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGI------LQQLDYGLVQC--QALVLAPTRELAQQIEKVMRALGDYLGVKVHACV--GGTSVREDQR 589 DG D+ D ++ ++ L ++ I F KP+ IQ+R I G DVI +AQ+G+GKT F GI L+ + G+ + +LVL+PTRELA+Q+ ++AL D L + CV GG S+ + QR Sbjct: 202 DGNDYKDQEDVDMAAWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPEIVAGHDVIGKAQTGSGKTLAF--GIPMVERWLEMQEQGVKRTGPMSLVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVTGGLSILKQQR 336
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: DRS1_PHANO (ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria nodorum GN=DRS1 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11 Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 2 Query: 251 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 586 SF AM L + +G+ A GF +P+ IQ + I +G DV+ A++G+GKTA F IL++L Y + + + PTRELA Q V L + + GG S RE + Sbjct: 286 SFHAMSLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALLAGGFSSREQE 400
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: DBPA_ECOLI (ATP-independent RNA helicase dbpA OS=Escherichia coli (strain K12) GN=dbpA PE=1 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11 Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 2 Query: 284 LRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGG 565 L + G+ + +Q + G DV QA++G+GKTA F G+LQQ+D L Q QALVL PTRELA Q+ +R L +L K+ GG Sbjct: 15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGG 109 The following BLAST results are available for this feature:
BLAST of DN621284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 376
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Sequences
The
following sequences are available for this feature:
EST sequence >DN621284 ID=DN621284; Name=DN621284; organism=Citrus sinensis; type=EST; length=594bpback to top |