DN621284

Overview
NameDN621284
Unique NameDN621284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.655e-41
Identity = 82/119 (68.91%), Postives = 97/119 (81.51%), Query Frame = 2
Query:  227 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            ++++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR +
Sbjct:   25 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE 143          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.655e-41
Identity = 82/119 (68.91%), Postives = 97/119 (81.51%), Query Frame = 2
Query:  227 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            ++++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR +
Sbjct:   25 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE 143          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.669e-40
Identity = 77/119 (64.71%), Postives = 99/119 (83.19%), Query Frame = 2
Query:  227 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            ++YDE+ DSFD+M L+  LLRG+YAYGFE+PSAIQQR I+P  KG DVI QAQSGTGKTATF    LQ+LD  +  CQAL++APTRELAQQI+KV+ A+GD++ ++ HAC+GGT+VR+D
Sbjct:   41 SNYDEITDSFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDD 159          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 6.258e-40
Identity = 80/119 (67.23%), Postives = 96/119 (80.67%), Query Frame = 2
Query:  227 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            T+YDEV D+FD M L+  LLRGIYAYGFE+PSAIQQR I+P     DV+ QAQSGTGKTATF   +LQ++D  L QCQAL+LAPTRELAQQI+KV+ ALGD + V+ HAC+GGT VR+D
Sbjct:   12 TNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDD 130          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_ASPNC (ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif1 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.258e-40
Identity = 78/119 (65.55%), Postives = 97/119 (81.51%), Query Frame = 2
Query:  227 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            T+YDEV DSFD+M L+  LLRG+YAYGFE+PSAIQQR I P   G DVI QAQSGTGKTATF    LQ++D  L  CQAL++APTRELAQQI+KV+ A+GD++ ++ HAC+GGT+VR+D
Sbjct:   18 TNYDEVTDSFDSMDLKPELLRGVYAYGFERPSAIQQRAIKPIIAGHDVIAQAQSGTGKTATFSISALQKIDQELKACQALIVAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVRDD 136          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_CRYPV (Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.394e-39
Identity = 79/119 (66.39%), Postives = 95/119 (79.83%), Query Frame = 2
Query:  227 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            ++YDE+ + F+A+ L+ +LLRGI+AYGFEKPSAIQQRGI P   G D I QAQSGTGKTATF    LQ++DY L  CQ L+LAPTRELAQQI+KV  ALGDY  ++ HACVGGTSVR+D
Sbjct:   24 SNYDEIVECFEALNLEGDLLRGIFAYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQKIDYSLNACQVLLLAPTRELAQQIQKVALALGDYCELRCHACVGGTSVRDD 142          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.394e-39
Identity = 75/121 (61.98%), Postives = 99/121 (81.82%), Query Frame = 2
Query:  227 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            ++Y++V DSFD+M L+  LLRG+YAYGFE+PSAIQQR I+P  KG DVI QAQSGTGKTATF    LQ++D  L  CQAL++APTRELAQQI+KV+ A+GD++ +  HAC+GGT++R+D +
Sbjct:   16 SNYEDVTDSFDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQKIDPNLKACQALIVAPTRELAQQIQKVVVAIGDFMNINCHACIGGTAIRDDMK 136          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.378e-39
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 2
Query:  200 LSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            L  DG    ++++EV D+FD M L+  LLRGIYAYGFE+PSAIQQR I+P   G D I QAQSGTGKTATF   ILQ++D  + + QALVLAPTRELAQQI+KV+ ALGDYL V  HACVGGT+VRED
Sbjct:   12 LQIDGDLINSNWNEVVDNFDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLNVDCHACVGGTAVRED 139          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.378e-39
Identity = 84/137 (61.31%), Postives = 103/137 (75.18%), Query Frame = 2
Query:  179 DTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            D  ++ ++  DG     +YD+V +SFD M L+E LLRGIY +GFEKPSAIQ+R IVP   G DVI QAQSGTGKTATF   ILQ++D+     QALV+APTRELAQQI+KVM ALG+YL V +  C+GGTSVR+DQR
Sbjct:    7 DVNVSSVVDADGL-IEGNYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQR 142          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.056e-39
Identity = 80/119 (67.23%), Postives = 95/119 (79.83%), Query Frame = 2
Query:  227 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            ++++E+ DS D M L E+LLRGIYAYGFEKPSAIQQR I+   KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR +
Sbjct:   25 SNWNEIVDSLDDMNLSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE 143          
The following BLAST results are available for this feature:
BLAST of DN621284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
IF4A1_HUMAN9.655e-4168.91Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN9.655e-4168.91Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
IF4A_EMENI3.669e-4064.71ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
IF4A_SCHPO6.258e-4067.23ATP-dependent RNA helicase eIF4A OS=Schizosaccharo... [more]
IF4A_ASPNC6.258e-4065.55ATP-dependent RNA helicase eIF4A OS=Aspergillus ni... [more]
IF4A_CRYPV1.394e-3966.39Eukaryotic initiation factor 4A OS=Cryptosporidium... [more]
IF4A_ASPTN1.394e-3961.98ATP-dependent RNA helicase eIF4A OS=Aspergillus te... [more]
IF4A_CRYNE2.378e-3965.63ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
IF4A_CAEEL2.378e-3961.31Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]
IF4A1_PONAB4.056e-3967.23Eukaryotic initiation factor 4A-I OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06I02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621284 ID=DN621284; Name=DN621284; organism=Citrus sinensis; type=EST; length=594bp
CGCAGATCCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCA
ATCTTCTCCTTCTCTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGAT
TTTAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGA
AGGATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGC
TCTCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGAC
AGTTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGC
CTATGGGTTTGAGAAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCT
TCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAA
ACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGT
CCAATGTCAGGCCCTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGA
TTGAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCAT
GCTTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCT
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