DN621284

Overview
NameDN621284
Unique NameDN621284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.919e-39
Identity = 82/131 (62.60%), Postives = 101/131 (77.10%), Query Frame = 2
Query:  191 NELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            N L   DG+   ++++ V D+FD M L+E LLRG+YAYGFE+PSAIQ R IVP  KG DVI QAQSGTGKTATF   ILQ++D  +   QAL+LAPTRELAQQI+KV+ ALGDY+ +  HAC+GGT+VRED
Sbjct:   20 NNLNIADGE-IESNWETVIDNFDNMELKEELLRGVYAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYMKIDCHACIGGTNVRED 149          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 82/125 (65.60%), Postives = 99/125 (79.20%), Query Frame = 2
Query:  218 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATFC  +LQ LD  + + QAL+LAPTRELA QI+KV+ ALGDY+ V+ HAC+GGT+V ED R
Sbjct:   31 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIR 155          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A3_DANRE (Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 82/125 (65.60%), Postives = 99/125 (79.20%), Query Frame = 2
Query:  218 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATFC  +LQ LD  + + QAL+LAPTRELA QI+KV+ ALGDY+ V+ HAC+GGT+V ED R
Sbjct:   22 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIR 146          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 82/125 (65.60%), Postives = 99/125 (79.20%), Query Frame = 2
Query:  218 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATFC  +LQ LD  + + QAL+LAPTRELA QI+KV+ ALGDY+ V+ HAC+GGT+V ED R
Sbjct:   31 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIR 155          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.629e-38
Identity = 77/132 (58.33%), Postives = 97/132 (73.48%), Query Frame = 2
Query:  197 LLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 592
            L   D     T+YDEV  SFD +GL++ LLRGIY YGFE PS+IQQR I+P  KG DV+ QAQSGTGKTATF    LQ +D  + + QAL++APTRELA QI+KV+ A G+Y+ ++ HAC+GGTSV ED R+
Sbjct:    5 LTDIDSSQITTNYDEVVTSFDDLGLKDELLRGIYGYGFENPSSIQQRAILPVIKGNDVLAQAQSGTGKTATFSISALQNIDEKIKKPQALIIAPTRELAHQIQKVVLAFGEYMKIECHACIGGTSVAEDIRV 136          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: I4A3B_XENLA (Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-B PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.434e-38
Identity = 80/125 (64.00%), Postives = 100/125 (80.00%), Query Frame = 2
Query:  218 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQ+ I    KG DVI Q+QSGTGKTATFC  +LQ LD  + + QAL+LAPT+ELA+QI+KV+ ALGDY+ V+ HAC+GGT+V ED R
Sbjct:   30 EFQTSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQIRETQALILAPTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIR 154          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A3_SALSA (Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.485e-38
Identity = 81/125 (64.80%), Postives = 99/125 (79.20%), Query Frame = 2
Query:  218 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATFC  +LQ LD  + + QAL+LAPTRELA QI+KV+ ALGDY+ V+ H+C+GGT+V ED R
Sbjct:   22 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIR 146          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.305e-37
Identity = 80/117 (68.38%), Postives = 94/117 (80.34%), Query Frame = 2
Query:  239 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            +V  +FDAMGL+E+LLRGIYAY FEKPSAIQQR I+P  +G DVI QAQSGTGKTATF   +LQ +D  L + QALVL+PTRELA QI+ V+ ALGDYL V+ HAC+GGTSV ED R
Sbjct:   21 KVATTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYLNVQCHACIGGTSVGEDIR 137          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A3_RAT (Eukaryotic initiation factor 4A-III OS=Rattus norvegicus GN=Eif4a3 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.105e-36
Identity = 86/154 (55.84%), Postives = 107/154 (69.48%), Query Frame = 2
Query:  131 MAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            MA  A   +   AR+   K  ++   +   F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATF   +LQ LD  + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R
Sbjct:    1 MAATATMATSGSARKRLLKEEDMTKVE---FETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIR 151          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A3_PIG (Eukaryotic initiation factor 4A-III OS=Sus scrofa GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.105e-36
Identity = 86/154 (55.84%), Postives = 107/154 (69.48%), Query Frame = 2
Query:  131 MAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            MA  A   +   AR+   K  ++   +   F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATF   +LQ LD  + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R
Sbjct:    1 MAATATMATSGSARKRLLKEEDMTKVE---FETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIR 151          
The following BLAST results are available for this feature:
BLAST of DN621284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
IF4A_USTMA6.919e-3962.60ATP-dependent RNA helicase eIF4A OS=Ustilago maydi... [more]
IF4A3_XENTR2.013e-3865.60Eukaryotic initiation factor 4A-III OS=Xenopus tro... [more]
IF4A3_DANRE2.013e-3865.60Eukaryotic initiation factor 4A-III OS=Danio rerio... [more]
I4A3A_XENLA2.013e-3865.60Eukaryotic initiation factor 4A-III-A OS=Xenopus l... [more]
IF4A_YARLI2.629e-3858.33ATP-dependent RNA helicase eIF4A OS=Yarrowia lipol... [more]
I4A3B_XENLA3.434e-3864.00Eukaryotic initiation factor 4A-III-B OS=Xenopus l... [more]
IF4A3_SALSA4.485e-3864.80Eukaryotic initiation factor 4A-III OS=Salmo salar... [more]
FAL1_USTMA1.305e-3768.38ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
IF4A3_RAT1.105e-3655.84Eukaryotic initiation factor 4A-III OS=Rattus norv... [more]
IF4A3_PIG1.105e-3655.84Eukaryotic initiation factor 4A-III OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06I02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621284 ID=DN621284; Name=DN621284; organism=Citrus sinensis; type=EST; length=594bp
CGCAGATCCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCA
ATCTTCTCCTTCTCTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGAT
TTTAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGA
AGGATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGC
TCTCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGAC
AGTTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGC
CTATGGGTTTGAGAAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCT
TCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAA
ACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGT
CCAATGTCAGGCCCTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGA
TTGAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCAT
GCTTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCT
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