DN621284

Overview
NameDN621284
Unique NameDN621284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_ASPTN (ATP-dependent RNA helicase fal1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fal1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.062e-35
Identity = 76/128 (59.38%), Postives = 95/128 (74.22%), Query Frame = 2
Query:  209 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R
Sbjct:   11 DRMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIR 138          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_ASPNC (ATP-dependent RNA helicase fal1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fal1 PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 7.917e-35
Identity = 76/128 (59.38%), Postives = 95/128 (74.22%), Query Frame = 2
Query:  209 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R
Sbjct:   11 DRMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIR 138          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.034e-34
Identity = 73/131 (55.73%), Postives = 93/131 (70.99%), Query Frame = 2
Query:  191 NELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            +++   D     T+YD+V   FD M L E LLRG++ YGF KPSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ++D  +   QAL+LAPTRELA QI+KV+ ALG ++ +KVHAC+GGTS  ED
Sbjct:    4 DQMTQLDESQIETNYDKVVYEFDDMNLNEKLLRGVFGYGFNKPSAIQQRAIMPIIEGNDVLAQAQSGTGKTGTFSIAALQRIDPAIKAPQALMLAPTRELALQIQKVVMALGFHMDIKVHACIGGTSFVED 134          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.034e-34
Identity = 76/128 (59.38%), Postives = 95/128 (74.22%), Query Frame = 2
Query:  209 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R
Sbjct:   11 DRLEFSTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIR 138          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.764e-34
Identity = 69/117 (58.97%), Postives = 90/117 (76.92%), Query Frame = 2
Query:  239 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            EV  SFD MG++++LLRGIYAYGFEKPSAIQQR ++P   G DVI QAQSGTGKT+     + Q +D  + + QAL+L+PTRELA Q E+VM A+GD++ ++VHAC+GG S+ ED R
Sbjct:   28 EVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIR 144          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.008e-34
Identity = 76/133 (57.14%), Postives = 97/133 (72.93%), Query Frame = 2
Query:  203 STDGQDF-----FTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            S DG  F     FTS + EV  +F++MGL+E LLRGI+ YGFEKPSAIQQR I+P  KG D I QAQSGTGKTATF  G LQ ++  +   Q L+L+PTRELAQQI+KV  AL +++ ++VHACVGG ++ +D
Sbjct:   11 SNDGSSFKLNETFTSSEVEVKPTFESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVEVNVRSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDD 143          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.008e-34
Identity = 75/128 (58.59%), Postives = 94/128 (73.44%), Query Frame = 2
Query:  209 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF    LQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R
Sbjct:   11 DKMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIR 138          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 3.929e-34
Identity = 72/119 (60.50%), Postives = 90/119 (75.63%), Query Frame = 2
Query:  227 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            T+YD+V   FD M L ENLLRG++ YGFE+PSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ++D  +   QAL+LAPTRELA QI+KV+ AL  ++ +KVHAC+GGTS  ED
Sbjct:   15 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 133          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.929e-34
Identity = 72/119 (60.50%), Postives = 90/119 (75.63%), Query Frame = 2
Query:  227 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            T+YD+V   FD M L ENLLRG++ YGFE+PSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ++D  +   QAL+LAPTRELA QI+KV+ AL  ++ +KVHAC+GGTS  ED
Sbjct:   15 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 133          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 6.702e-34
Identity = 70/115 (60.87%), Postives = 85/115 (73.91%), Query Frame = 2
Query:  239 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            ++Y +F++M L+  LL+GIY YGFE PSAIQ R I+   +G D I QAQSGTGKTATF  GIL  +D     CQALVL+PTRELAQQIE V+  LGDY+ V+ HAC+GGT V ED
Sbjct:   21 KIYPTFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGED 135          
The following BLAST results are available for this feature:
BLAST of DN621284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
FAL1_ASPTN6.062e-3559.38ATP-dependent RNA helicase fal1 OS=Aspergillus ter... [more]
FAL1_ASPNC7.917e-3559.38ATP-dependent RNA helicase fal1 OS=Aspergillus nig... [more]
IF4A_CANGA1.034e-3455.73ATP-dependent RNA helicase eIF4A OS=Candida glabra... [more]
FAL1_NEOFI1.034e-3459.38ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
RH2_ORYSJ1.764e-3458.97DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat... [more]
IF4A_DICDI3.008e-3457.14Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
FAL1_EMENI3.008e-3458.59ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]
IF4A_YEAST3.929e-3460.50ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_YEAS73.929e-3460.50ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
FAL1_PICGU6.702e-3460.87ATP-dependent RNA helicase FAL1 OS=Pichia guillier... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06I02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621284 ID=DN621284; Name=DN621284; organism=Citrus sinensis; type=EST; length=594bp
CGCAGATCCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCA
ATCTTCTCCTTCTCTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGAT
TTTAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGA
AGGATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGC
TCTCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGAC
AGTTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGC
CTATGGGTTTGAGAAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCT
TCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAA
ACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGT
CCAATGTCAGGCCCTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGA
TTGAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCAT
GCTTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCT
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