DN621284

Overview
NameDN621284
Unique NameDN621284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.143e-33
Identity = 71/131 (54.20%), Postives = 93/131 (70.99%), Query Frame = 2
Query:  191 NELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            + + + +  +  T+YD++   FD + L+E LLRGIY YGF  PSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ++D  +   QAL+LAPTRELA QI+KV+ AL  ++ VKVHAC+GGT  RED
Sbjct:    3 DSITNPENSEIQTNYDKIVHKFDELKLKEVLLRGIYGYGFVDPSAIQQRAILPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDESIKAPQALILAPTRELALQIQKVVMALALHMDVKVHACIGGTDPRED 133          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.547e-33
Identity = 71/130 (54.62%), Postives = 91/130 (70.00%), Query Frame = 2
Query:  194 ELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            E    D     T+YD V  SFD + L+ N++RGI+ YG+E PSAIQQR I+P  +G DV+ QAQSGTGKTATF    LQ++D  L   QAL+LAPTRELA QI+ V+  +G YL V VHA +GGTS+++D
Sbjct:    4 EFNEIDANTIETNYDNVVYSFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENLKATQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDD 133          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.344e-33
Identity = 71/125 (56.80%), Postives = 91/125 (72.80%), Query Frame = 2
Query:  209 DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            D     ++YD+V  SFD + L+E LLRGI+ YGF +PSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ +D  +   Q L+LAPTRELA QI+KV+ AL  ++ VKVHAC+GGTS++ED
Sbjct:    9 DENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED 133          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.410e-33
Identity = 70/119 (58.82%), Postives = 89/119 (74.79%), Query Frame = 2
Query:  227 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            T+YD+V   FD M L++ LL+G+Y YGFE+PSAIQQR I+P  +  DV+ QAQSGTGKT TF    LQ++D  +   QAL+LAPTRELA QI+KV+ AL  ++ VKVHAC+GGTS  ED
Sbjct:   16 TNYDKVVYKFDDMNLKDELLKGVYGYGFEEPSAIQQRAILPIVEEHDVLAQAQSGTGKTGTFSIAALQRIDSSIKAPQALILAPTRELALQIQKVVIALAFHMDVKVHACIGGTSFVED 134          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.264e-32
Identity = 67/115 (58.26%), Postives = 86/115 (74.78%), Query Frame = 2
Query:  239 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            +V+ +F++M L+ +LL+GIY YGFE PSAIQ R I+    G D I QAQSGTGKTATF  G+L+ +D     CQAL+L+PTRELAQQI+ V++ LGDY+ V  HAC+GGT V ED
Sbjct:   23 KVHATFESMNLKTDLLKGIYGYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLEVIDTKSKDCQALILSPTRELAQQIQSVVKHLGDYMNVHTHACIGGTHVGED 137          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_YARLI (ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica GN=FAL1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.816e-32
Identity = 72/128 (56.25%), Postives = 93/128 (72.66%), Query Frame = 2
Query:  209 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 589
            D  +F TS D +V  +F++M L+++LLRGIYAYGFE PSAIQ R I    KG D I QAQSGTGKTATF   +L+ +D    + QA+VL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGTS+  D +
Sbjct:   10 DELEFKTSKDVDVTPTFESMDLKDDLLRGIYAYGFEAPSAIQSRAITQIIKGRDTIAQAQSGTGKTATFSISMLEVIDTKHRETQAMVLSPTRELATQIQSVILALGDYMNVQCHACIGGTSLSVDMK 137          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.677e-32
Identity = 65/115 (56.52%), Postives = 85/115 (73.91%), Query Frame = 2
Query:  239 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            +V+ +F++M L+ +LL+GIY YGFE PSAIQ R I+    G D I QAQSGTGKTATF  G+LQ +D     CQAL+L+PTRELA QI+ V++ LGDY+ +  HAC+GGT V +D
Sbjct:   23 KVHATFESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDYMNIHTHACIGGTHVGDD 137          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.273e-32
Identity = 67/119 (56.30%), Postives = 88/119 (73.95%), Query Frame = 2
Query:  227 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            T+YD V  +FD + L+ N++RGI+ YG+E PSAIQQR I+P  +G DV+ QAQSGTGKTATF    LQ++D      QAL+LAPTRELA QI+ V+  +G YL V VHA +GGTS+++D
Sbjct:   16 TNYDNVVYTFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDD 134          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.193e-32
Identity = 67/119 (56.30%), Postives = 88/119 (73.95%), Query Frame = 2
Query:  227 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            T+YD V   FD + L+ N++RGI+ YG+E PSAIQQR I+P  +G DV+ QAQSGTGKTATF    LQ++D      QAL+LAPTRELA QI+ V+ ++G YL V VHA +GGTS+++D
Sbjct:   16 TNYDNVVYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMQDD 134          
BLAST of DN621284 vs. ExPASy Swiss-Prot
Match: FAL1_CANAL (ATP-dependent RNA helicase FAL1 OS=Candida albicans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.193e-32
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 2
Query:  239 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 583
            +V+ +F++M L+ +LL+GIYAYGFE PSAIQ R I+    G D I QAQSGTGKTATF  G+L+ +D    +CQAL+L+PTRELA QI+ V++ LGDY+ +  HAC+GG +V ED
Sbjct:   23 KVHRTFESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGED 137          
The following BLAST results are available for this feature:
BLAST of DN621284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
IF4A_ASHGO1.143e-3354.20ATP-dependent RNA helicase eIF4A OS=Ashbya gossypi... [more]
IF4A_PICGU2.547e-3354.62ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
IF4A_KLULA4.344e-3356.80ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]
IF4A_VANPO7.410e-3358.82ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]
FAL1_DEBHA1.264e-3258.26ATP-dependent RNA helicase FAL1 OS=Debaryomyces ha... [more]
FAL1_YARLI2.816e-3256.25ATP-dependent RNA helicase FAL1 OS=Yarrowia lipoly... [more]
FAL1_PICST3.677e-3256.52ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]
IF4A_DEBHA6.273e-3256.30ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
IF4A_PICST8.193e-3256.30ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
FAL1_CANAL8.193e-3256.52ATP-dependent RNA helicase FAL1 OS=Candida albican... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06I02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621284 ID=DN621284; Name=DN621284; organism=Citrus sinensis; type=EST; length=594bp
CGCAGATCCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCA
ATCTTCTCCTTCTCTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGAT
TTTAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGA
AGGATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGC
TCTCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGAC
AGTTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGC
CTATGGGTTTGAGAAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCT
TCTGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAA
ACAGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGT
CCAATGTCAGGCCCTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGA
TTGAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCAT
GCTTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCT
back to top