DN621283
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP2_NEUCR (ATP-dependent RNA helicase dbp-2 OS=Neurospora crassa GN=dbp-2 PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.200e-21 Identity = 47/130 (36.15%), Postives = 79/130 (60.77%), Query Frame = -3 Query: 208 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 597 +IF T+R D +T +R + HGD QN RD ++ +F++G S +++ TD+ +RGIDV+ ++ V+NYD P E+Y+HRIGR+GR G KG AI F T D+ + ++ +++ +A++ Sbjct: 385 LIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQARELVGVLQEAKQQIDPRLAEM 514
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.200e-21 Identity = 49/130 (37.69%), Postives = 78/130 (60.00%), Query Frame = -3 Query: 208 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 597 +IFV T+R D LT +R A HGD Q RD ++ EF+SG S +++ TD+ +RG+DV+ + VINYD P E+Y+HRIGR+GR GRKG + + T D+ + ++ + ++P + ++ Sbjct: 360 LIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAARELVQILRESKADIPPELEEM 489
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RHLB_SHESA (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain ANA-3) GN=rhlB PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21 Identity = 59/167 (35.33%), Postives = 93/167 (55.69%), Query Frame = -3 Query: 247 MNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 741 MN+PV++ + +E T + IK+ FY + +E K+ L L E ++++F NT+ + L + H V GD+ Q R I+ +F G +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KGV+++F + L I+ + N Sbjct: 213 MNEPVKVEIAPEEKTSKNIKEEIFYPS---QEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPAIETYIN 376
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: PRP28_NEOFI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp28 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21 Identity = 52/166 (31.33%), Postives = 94/166 (56.63%), Query Frame = -3 Query: 256 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI-FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 750 RK++ +P + + ++ ++Q + E+ + + L D+ + +I FVN +R D + +++ + HG Q R+ + R+GS+ VL+ TDL RGIDV VSLV+N+++ E+Y HRIGR+GR G+ GVAI F+ +D +++D+++ Sbjct: 586 RKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQ 751
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: PRP28_ASPTN (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp28 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21 Identity = 58/183 (31.69%), Postives = 103/183 (56.28%), Query Frame = -3 Query: 205 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI-FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 750 RK++ +P + + ++ ++Q + E+ + + L D+ + +I FVN +R D + +++ + HG Q R+ + R+GS+ VL+ TDL RGIDV VSLV+N+++ T E+Y HRIGR+GR G+ GVAI F+ +D +++D+++ ++I+ S V D L Sbjct: 574 RKYLRRPAIVTIGSAGEAVDTVEQRVELIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQ---MLIKSPISRVPDEL 753
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: PRP28_ASPFU (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus fumigatus GN=prp28 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21 Identity = 52/166 (31.33%), Postives = 94/166 (56.63%), Query Frame = -3 Query: 256 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI-FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 750 RK++ +P + + ++ ++Q + E+ + + L D+ + +I FVN +R D + +++ + HG Q R+ + R+GS+ VL+ TDL RGIDV VSLV+N+++ E+Y HRIGR+GR G+ GVAI F+ +D +++D+++ Sbjct: 586 RKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQ 751
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DDX5_MACFA (Probable ATP-dependent RNA helicase DDX5 OS=Macaca fascicularis GN=DDX5 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21 Identity = 53/136 (38.97%), Postives = 81/136 (59.56%), Query Frame = -3 Query: 262 NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 669 +VEK+E KL L + + ++++FV T+R+ D LT KMR HGD Q R ++ EF+ G + +LI TD+ +RG+DV+ V VINYD P E+Y+HRIGR+ R + G A F T ++ + + D+ Sbjct: 322 DVEKDE-KLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDL 456
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DDX4_XENLA (Probable ATP-dependent RNA helicase DDX4 OS=Xenopus laevis GN=ddx4 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21 Identity = 51/156 (32.69%), Postives = 94/156 (60.26%), Query Frame = -3 Query: 196 KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFYNVVIEELPSNVADLL*GG 660 +E K+E L ++ ++ +++IFVNT++K D++ + + ++ HGD +Q R+ + +FR+G V++ T + ARG+D++ V VINYD+P + + Y+HRIGR+GR G G A +F +DD + + K +E+P+ + ++ GG Sbjct: 509 RENGKMEKLLEILKSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNVQDDHVIARPLVKILTDAHQEVPAWLEEIAFGG 664
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DDX3X_MOUSE (ATP-dependent RNA helicase DDX3X OS=Mus musculus GN=Ddx3x PE=1 SV=3) HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21 Identity = 60/176 (34.09%), Postives = 97/176 (55.11%), Query Frame = -3 Query: 223 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 750 R F+++ + + V R T E I Q V VE+ + + L L T + +++FV T++ D L D + + ++ HGD Q R+ + +FRSG S +L+ T + ARG+D+ V VIN+DLP+ E Y+HRIGR+GR G G+A +F + + D+ +E+PS Sbjct: 394 RDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 569
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DDX23_PONAB (Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii GN=DDX23 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21 Identity = 51/165 (30.91%), Postives = 91/165 (55.15%), Query Frame = -3 Query: 256 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 750 R ++ +P + + E ++Q V + E K + L + E +IFVN ++ D L + + HG Q R+ + ++G+ +L+ TD+ RGID+Q VS+V+NYD+ E+Y+HRIGR+GR G+ GVAI F+T++D + +++++ Sbjct: 618 RSYLRRPAVVYIGSAGKPHERVEQ-KVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQ 781 The following BLAST results are available for this feature:
BLAST of DN621283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN621283 ID=DN621283; Name=DN621283; organism=Citrus sinensis; type=EST; length=752bpback to top |