DN621283

Overview
NameDN621283
Unique NameDN621283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP2_NEUCR (ATP-dependent RNA helicase dbp-2 OS=Neurospora crassa GN=dbp-2 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.200e-21
Identity = 47/130 (36.15%), Postives = 79/130 (60.77%), Query Frame = -3
Query:  208 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 597
            +IF  T+R  D +T  +R       + HGD  QN RD ++ +F++G S +++ TD+ +RGIDV+ ++ V+NYD P   E+Y+HRIGR+GR G KG AI F T D+ +   ++        +++   +A++
Sbjct:  385 LIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQARELVGVLQEAKQQIDPRLAEM 514          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.200e-21
Identity = 49/130 (37.69%), Postives = 78/130 (60.00%), Query Frame = -3
Query:  208 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 597
            +IFV T+R  D LT  +R       A HGD  Q  RD ++ EF+SG S +++ TD+ +RG+DV+ +  VINYD P   E+Y+HRIGR+GR GRKG +  + T D+ +   ++ +       ++P  + ++
Sbjct:  360 LIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAARELVQILRESKADIPPELEEM 489          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RHLB_SHESA (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain ANA-3) GN=rhlB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 59/167 (35.33%), Postives = 93/167 (55.69%), Query Frame = -3
Query:  247 MNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 741
            MN+PV++ +  +E T + IK+  FY +   +E K+  L  L E     ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F  G   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KGV+++F   +    L  I+ + N
Sbjct:  213 MNEPVKVEIAPEEKTSKNIKEEIFYPS---QEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPAIETYIN 376          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: PRP28_NEOFI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp28 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 52/166 (31.33%), Postives = 94/166 (56.63%), Query Frame = -3
Query:  256 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI-FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 750
            RK++ +P  + +      ++ ++Q    +  E+ + + L D+  +      +I FVN +R  D +  +++    +    HG   Q  R+  +   R+GS+ VL+ TDL  RGIDV  VSLV+N+++    E+Y HRIGR+GR G+ GVAI F+  +D  +++D+++
Sbjct:  586 RKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQ 751          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: PRP28_ASPTN (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp28 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 58/183 (31.69%), Postives = 103/183 (56.28%), Query Frame = -3
Query:  205 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI-FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 750
            RK++ +P  + +      ++ ++Q    +  E+ + + L D+  +      +I FVN +R  D +  +++    +    HG   Q  R+  +   R+GS+ VL+ TDL  RGIDV  VSLV+N+++ T  E+Y HRIGR+GR G+ GVAI F+  +D  +++D+++   ++I+   S V D L
Sbjct:  574 RKYLRRPAIVTIGSAGEAVDTVEQRVELIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQ---MLIKSPISRVPDEL 753          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: PRP28_ASPFU (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus fumigatus GN=prp28 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 52/166 (31.33%), Postives = 94/166 (56.63%), Query Frame = -3
Query:  256 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI-FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 750
            RK++ +P  + +      ++ ++Q    +  E+ + + L D+  +      +I FVN +R  D +  +++    +    HG   Q  R+  +   R+GS+ VL+ TDL  RGIDV  VSLV+N+++    E+Y HRIGR+GR G+ GVAI F+  +D  +++D+++
Sbjct:  586 RKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQ 751          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DDX5_MACFA (Probable ATP-dependent RNA helicase DDX5 OS=Macaca fascicularis GN=DDX5 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 53/136 (38.97%), Postives = 81/136 (59.56%), Query Frame = -3
Query:  262 NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 669
            +VEK+E KL  L +   +    ++++FV T+R+ D LT KMR         HGD  Q  R  ++ EF+ G + +LI TD+ +RG+DV+ V  VINYD P   E+Y+HRIGR+ R  + G A  F T ++ + + D+
Sbjct:  322 DVEKDE-KLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDL 456          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DDX4_XENLA (Probable ATP-dependent RNA helicase DDX4 OS=Xenopus laevis GN=ddx4 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 51/156 (32.69%), Postives = 94/156 (60.26%), Query Frame = -3
Query:  196 KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFYNVVIEELPSNVADLL*GG 660
            +E  K+E L ++ ++    +++IFVNT++K D++   +     + ++ HGD +Q  R+  + +FR+G   V++ T + ARG+D++ V  VINYD+P + + Y+HRIGR+GR G  G A +F   +DD  +   + K      +E+P+ + ++  GG
Sbjct:  509 RENGKMEKLLEILKSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNVQDDHVIARPLVKILTDAHQEVPAWLEEIAFGG 664          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DDX3X_MOUSE (ATP-dependent RNA helicase DDX3X OS=Mus musculus GN=Ddx3x PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 60/176 (34.09%), Postives = 97/176 (55.11%), Query Frame = -3
Query:  223 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 750
            R F+++ + + V R   T E I Q  V VE+ + +   L  L  T   + +++FV T++  D L D +    +  ++ HGD  Q  R+  + +FRSG S +L+ T + ARG+D+  V  VIN+DLP+  E Y+HRIGR+GR G  G+A +F    +  +  D+        +E+PS
Sbjct:  394 RDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 569          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DDX23_PONAB (Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii GN=DDX23 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 51/165 (30.91%), Postives = 91/165 (55.15%), Query Frame = -3
Query:  256 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 750
            R ++ +P  + +       E ++Q  V +  E  K + L  + E       +IFVN ++  D L   +    +     HG   Q  R+  +   ++G+  +L+ TD+  RGID+Q VS+V+NYD+    E+Y+HRIGR+GR G+ GVAI F+T++D  + +++++
Sbjct:  618 RSYLRRPAVVYIGSAGKPHERVEQ-KVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQ 781          
The following BLAST results are available for this feature:
BLAST of DN621283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_NEUCR1.200e-2136.15ATP-dependent RNA helicase dbp-2 OS=Neurospora cra... [more]
DBP2_CRYNE1.200e-2137.69ATP-dependent RNA helicase DBP2-A OS=Cryptococcus ... [more]
RHLB_SHESA1.568e-2135.33ATP-dependent RNA helicase rhlB OS=Shewanella sp. ... [more]
PRP28_NEOFI1.568e-2131.33Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_ASPTN1.568e-2131.69Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_ASPFU1.568e-2131.33Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
DDX5_MACFA1.568e-2138.97Probable ATP-dependent RNA helicase DDX5 OS=Macaca... [more]
DDX4_XENLA1.568e-2132.69Probable ATP-dependent RNA helicase DDX4 OS=Xenopu... [more]
DDX3X_MOUSE1.568e-2134.09ATP-dependent RNA helicase DDX3X OS=Mus musculus G... [more]
DDX23_PONAB1.568e-2130.91Probable ATP-dependent RNA helicase DDX23 OS=Pongo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06I02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621283 ID=DN621283; Name=DN621283; organism=Citrus sinensis; type=EST; length=752bp
TTTTTTTTGCAATGTGCATGACCCATATGATTAAATGGTCGGATATGTTT
GAGAACAACATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACCAAA
AAAAAAAAAAAAAGGGGAGAAAAGAACCACCACATTAAACAGTACTTGCA
AAATCAGGAAACCCCTTCTTGCCTCGACAAACTTACAAAAACAGAACCTC
CTCAAAGAAGGTCAGCAACGTTTGAAGGCAGCTCCTCAATGACCACGTTA
TAGAACTTTTGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCACAAA
ATTAATGGCAACACCCTTTCTTCCAAATCGACCACTTCGTCCAATACGGT
GAAGGTAGTTTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAGTGAA
ACTTGCTGCACATCAATACCACGAGCCAACAGATCAGTGGTGATGAGAAC
ACGAGAAGAACCAGAGCGAAATTCACGCATAATGATATCTCGGGTGTTCT
GATCCATGTCCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCGCATC
TTGTCCGTAAGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGACACT
CTGGGTTATGGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGCTTCC
ATTCTTCCTTCTCAACATTGACATAAAATTGCTTGATACCCTCAAGGGTG
AGTTCATCACGTTTAACCAAGATTCTCACAGGCTTGTTCATAAACTTCCT
TG
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