DN621283
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP2_ENCCU (ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi GN=DBP2 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20 Identity = 60/182 (32.97%), Postives = 100/182 (54.95%), Query Frame = -3 Query: 205 FMNKPVRILVKRDEL-TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK-GVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 744 +MN+ ++++V +EL T IKQ V V K + L + + + ++F N +R D L + + +A HGD QN RD ++ +FRSG +LI T++ RG+DV V LVIN+D P E+Y+HRIGR+ R K G++ F T D+ ++ + + +PS++ D++ Sbjct: 286 YMNEYIQVVVGNEELKTNSKIKQI-VEVCSGREKEDKLIGVLDNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKANARELIRMLREANQTVPSDLEDMV 466
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RH24_ORYSJ (DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica GN=Os03g0308500 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20 Identity = 58/187 (31.02%), Postives = 104/187 (55.61%), Query Frame = -3 Query: 208 RKFMNKPVRILVKRDELTLEGIKQFYVNV-----EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK-GVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 750 R+ + P+R+ V + E IKQ VNV EK W LE L + + + ++F + +VD + ++ R ++A HGD DQ +R +++F+SG VL+ TD+ ARG+D++ + V+N+D+ + + ++HRIGR+GR G K G A +T+ + R ++ +++P+ + DL Sbjct: 416 REILTDPIRVTVGQVGSANEDIKQV-VNVLPSDAEKMPWLLEKLPGMIDDGDV---LVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVRFAGELVHCLIAAGQDVPNELMDL 598
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: PRP5_PICST (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Pichia stipitis GN=PRP5 PE=3 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20 Identity = 65/196 (33.16%), Postives = 102/196 (52.04%), Query Frame = -3 Query: 208 RKFMNKPVRILVKRDELTLEGIKQFYVNVEK------EEWKLETLCDLYETLAI----TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV--LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK---FYNVVIEELPSNVADL 750 ++ + P+ I+V + I Q EK E+ K + L ++ +I ++ +IFV + D L K+ +H HG DQ R ++EF S S V LI T + ARG+DV+ + LVINYD P E+Y+HR+GR+GR G KG AI FV+ D ER + D+ + + +E+PS + ++ Sbjct: 473 KRLLYNPLEIIVGGISVVASEITQKVELFEKGESSQLEDEKFDRLLNILNVFSIESKHSKVLIFVEKQSAADDLLVKLLGSNHPCLTIHGGKDQIDRKYAIKEFSSKDSGVDILIATSIAARGLDVKGLDLVINYDPPNHMEDYVHRVGRTGRAGMKGTAITFVSSDQERSVTDLVRAMTMSKIPEDEIPSRLIEI 668
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: PRP5_CHAGB (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium globosum GN=PRP5 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20 Identity = 60/185 (32.43%), Postives = 96/185 (51.89%), Query Frame = -3 Query: 208 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWK----LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 750 +K + +PV I V + I Q V + E K LE L +LY +++IFV + K D L ++ R + + HG DQ R+ + +F+ G ++I T + ARG+DV+Q+ LV+NYD P E+Y+HR GR+GR G G A+ F+T + E I K + +P + ++ Sbjct: 629 KKVLREPVEIQVGGRSVVAPEITQI-VEILDEGKKFVRLLELLGELYADDDDVRALIFVERQEKADDLLREVLRRGYGCMSIHGGKDQEDRNSTISDFKKGVCPIMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQENCAPGIAKALEQSGQPVPEQLNEM 812
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DDX20_DICDI (Probable ATP-dependent RNA helicase ddx20 OS=Dictyostelium discoideum GN=ddx20 PE=3 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20 Identity = 58/154 (37.66%), Postives = 90/154 (58.44%), Query Frame = -3 Query: 295 VRILVKRDELTLEGIKQFYV---------NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 729 V I + D +LEGIKQ+Y N + + K ++L + E ++ Q++IF N + + + LT ++ + G +Q R M +S + R+L++TDL++RGIDV++V+LVIN DLP E Y HRIGR+GRFG GV+I F+ Sbjct: 319 VEIRLCSDTPSLEGIKQYYQIFRNDFTENNYKTFQNKCKSLVLVLEQVSFYQAIIFCNHKIRGEELTRQLNREGWPTAFIAGGQNQKDRLSTMSALKSFNIRILVSTDLISRGIDVERVNLVINLDLPKDHETYFHRIGRTGRFGTYGVSITFI 472
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP10_COCIM (ATP-dependent RNA helicase DBP10 OS=Coccidioides immitis GN=DBP10 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20 Identity = 54/149 (36.24%), Postives = 85/149 (57.05%), Query Frame = -3 Query: 172 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVI------EELPSNVADLL*GGSVFVSLSR 600 ++IFV T+ VD++ +R VS +G +DQ R I + FR+G S +L+ TD+ ARGID+ + VINYD P+Q + ++HR+GR+ R GRKG + + V D L D+Q F + +E + D++ GG S++R Sbjct: 365 TIIFVATKHHVDYIASLLRESGFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAARGIDIPILENVINYDFPSQAKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRLVMGRGQQESANFAEDVVVGGMARESIAR 513
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: ROK1_YARLI (ATP-dependent RNA helicase ROK1 OS=Yarrowia lipolytica GN=ROK1 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20 Identity = 59/179 (32.96%), Postives = 99/179 (55.31%), Query Frame = -3 Query: 208 PVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY-ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE---RMLFDIQKFYNVVIEELPSNVADL 732 P+RI++ + + ++Q V EE KL + + E + +IF+ + + L ++ V HGDM R ++ FR+G VLI TD+LARGID + ++LVINYD+P ++Y+HRIGR+GR GR G A+ F T++D +++ ++ K + + +N+A L Sbjct: 322 PLRIIIGNKQAAAQTVEQKLVYAGNEEGKLVAIRQMAREGQLVAPVIIFLQSIDRAKALFKELVFDGINVDQIHGDMTAAKRASVIDRFRNGEVWVLICTDVLARGIDFRGINLVINYDVPQSAQSYVHRIGRTGRAGRLGKAVTFFTKEDATNVKVVVNVMKQSGQEVPDWLNNLAPL 500
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RHLB_PSEA6 (ATP-dependent RNA helicase rhlB OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rhlB PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20 Identity = 55/150 (36.67%), Postives = 87/150 (58.00%), Query Frame = -3 Query: 298 MNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 741 M+ P + V+ + T IK+ FY + +E K+ L L E ++++F NT+ + + D +++ H V GD+ QN R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G+ G +I+F Sbjct: 210 MDNPTHVQVEPERKTGTRIKEELFYPS---DEDKMALLLSLMEEEWPDKAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISF 356
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RH11_ARATH (DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis thaliana GN=RH11 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20 Identity = 55/178 (30.90%), Postives = 98/178 (55.06%), Query Frame = -3 Query: 226 FMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 744 FM+ + + V R + + I Q V +E K L DL TQ +++FV T+R D L + + + ++ HGD Q R++ +R F++G + +L+ TD+ ARG+D+ V+ V+N+DLP ++Y+HRIGR+GR G+ G+A F ++ ++ + + +E+P Sbjct: 359 FMSNYIFLAVGRVGSSTDLITQ-RVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVP 535
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: PRP28_MAGGR (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Magnaporthe grisea GN=PRP28 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20 Identity = 50/148 (33.78%), Postives = 88/148 (59.46%), Query Frame = -3 Query: 256 TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 699 T+E + V+ ++ KL + + Y T + ++FVNT+ D + ++S + HG+ Q+ R+ ++ FR G + VL+ TD+ ARG+D+ VSLVIN+++ E Y HRIGR+GR G++G+AI F +D +L+ +++ Sbjct: 503 TVEQQAMWVVSEDERRNKLRAMLNTYGTGKLV--IVFVNTKSNCDAVAKDLKSSSFSAVTLHGNKTQDQREAALQSFRDGRTNVLVATDVAARGLDIPDVSLVINFNMAGTIEVYTHRIGRTGRAGKEGMAITFCGPEDHGVLYHLKQ 648 The following BLAST results are available for this feature:
BLAST of DN621283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN621283 ID=DN621283; Name=DN621283; organism=Citrus sinensis; type=EST; length=752bpback to top |