DN621283

Overview
NameDN621283
Unique NameDN621283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP2_ENCCU (ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi GN=DBP2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20
Identity = 60/182 (32.97%), Postives = 100/182 (54.95%), Query Frame = -3
Query:  205 FMNKPVRILVKRDEL-TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK-GVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 744
            +MN+ ++++V  +EL T   IKQ  V V     K + L  + +     + ++F N +R  D L   +    +  +A HGD  QN RD ++ +FRSG   +LI T++  RG+DV  V LVIN+D P   E+Y+HRIGR+ R   K G++  F T  D+    ++ +      + +PS++ D++
Sbjct:  286 YMNEYIQVVVGNEELKTNSKIKQI-VEVCSGREKEDKLIGVLDNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKANARELIRMLREANQTVPSDLEDMV 466          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RH24_ORYSJ (DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica GN=Os03g0308500 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 58/187 (31.02%), Postives = 104/187 (55.61%), Query Frame = -3
Query:  208 RKFMNKPVRILVKRDELTLEGIKQFYVNV-----EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK-GVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 750
            R+ +  P+R+ V +     E IKQ  VNV     EK  W LE L  + +   +   ++F   + +VD +  ++  R   ++A HGD DQ +R   +++F+SG   VL+ TD+ ARG+D++ +  V+N+D+  + + ++HRIGR+GR G K G A   +T+ + R   ++        +++P+ + DL
Sbjct:  416 REILTDPIRVTVGQVGSANEDIKQV-VNVLPSDAEKMPWLLEKLPGMIDDGDV---LVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVRFAGELVHCLIAAGQDVPNELMDL 598          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: PRP5_PICST (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Pichia stipitis GN=PRP5 PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 65/196 (33.16%), Postives = 102/196 (52.04%), Query Frame = -3
Query:  208 RKFMNKPVRILVKRDELTLEGIKQFYVNVEK------EEWKLETLCDLYETLAI----TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV--LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK---FYNVVIEELPSNVADL 750
            ++ +  P+ I+V    +    I Q     EK      E+ K + L ++    +I    ++ +IFV  +   D L  K+   +H     HG  DQ  R   ++EF S  S V  LI T + ARG+DV+ + LVINYD P   E+Y+HR+GR+GR G KG AI FV+ D ER + D+ +      +  +E+PS + ++
Sbjct:  473 KRLLYNPLEIIVGGISVVASEITQKVELFEKGESSQLEDEKFDRLLNILNVFSIESKHSKVLIFVEKQSAADDLLVKLLGSNHPCLTIHGGKDQIDRKYAIKEFSSKDSGVDILIATSIAARGLDVKGLDLVINYDPPNHMEDYVHRVGRTGRAGMKGTAITFVSSDQERSVTDLVRAMTMSKIPEDEIPSRLIEI 668          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: PRP5_CHAGB (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium globosum GN=PRP5 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 60/185 (32.43%), Postives = 96/185 (51.89%), Query Frame = -3
Query:  208 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWK----LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 750
            +K + +PV I V    +    I Q  V +  E  K    LE L +LY      +++IFV  + K D L  ++  R +   + HG  DQ  R+  + +F+ G   ++I T + ARG+DV+Q+ LV+NYD P   E+Y+HR GR+GR G  G A+ F+T + E     I K      + +P  + ++
Sbjct:  629 KKVLREPVEIQVGGRSVVAPEITQI-VEILDEGKKFVRLLELLGELYADDDDVRALIFVERQEKADDLLREVLRRGYGCMSIHGGKDQEDRNSTISDFKKGVCPIMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQENCAPGIAKALEQSGQPVPEQLNEM 812          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DDX20_DICDI (Probable ATP-dependent RNA helicase ddx20 OS=Dictyostelium discoideum GN=ddx20 PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 58/154 (37.66%), Postives = 90/154 (58.44%), Query Frame = -3
Query:  295 VRILVKRDELTLEGIKQFYV---------NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 729
            V I +  D  +LEGIKQ+Y          N +  + K ++L  + E ++  Q++IF N + + + LT ++       +   G  +Q  R   M   +S + R+L++TDL++RGIDV++V+LVIN DLP   E Y HRIGR+GRFG  GV+I F+
Sbjct:  319 VEIRLCSDTPSLEGIKQYYQIFRNDFTENNYKTFQNKCKSLVLVLEQVSFYQAIIFCNHKIRGEELTRQLNREGWPTAFIAGGQNQKDRLSTMSALKSFNIRILVSTDLISRGIDVERVNLVINLDLPKDHETYFHRIGRTGRFGTYGVSITFI 472          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP10_COCIM (ATP-dependent RNA helicase DBP10 OS=Coccidioides immitis GN=DBP10 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 54/149 (36.24%), Postives = 85/149 (57.05%), Query Frame = -3
Query:  172 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVI------EELPSNVADLL*GGSVFVSLSR 600
            ++IFV T+  VD++   +R     VS  +G +DQ  R I +  FR+G S +L+ TD+ ARGID+  +  VINYD P+Q + ++HR+GR+ R GRKG + + V   D   L D+Q F    +      +E  +   D++ GG    S++R
Sbjct:  365 TIIFVATKHHVDYIASLLRESGFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAARGIDIPILENVINYDFPSQAKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRLVMGRGQQESANFAEDVVVGGMARESIAR 513          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: ROK1_YARLI (ATP-dependent RNA helicase ROK1 OS=Yarrowia lipolytica GN=ROK1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 59/179 (32.96%), Postives = 99/179 (55.31%), Query Frame = -3
Query:  208 PVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY-ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE---RMLFDIQKFYNVVIEELPSNVADL 732
            P+RI++   +   + ++Q  V    EE KL  +  +  E   +   +IF+ +  +   L  ++      V   HGDM    R  ++  FR+G   VLI TD+LARGID + ++LVINYD+P   ++Y+HRIGR+GR GR G A+ F T++D    +++ ++ K     + +  +N+A L
Sbjct:  322 PLRIIIGNKQAAAQTVEQKLVYAGNEEGKLVAIRQMAREGQLVAPVIIFLQSIDRAKALFKELVFDGINVDQIHGDMTAAKRASVIDRFRNGEVWVLICTDVLARGIDFRGINLVINYDVPQSAQSYVHRIGRTGRAGRLGKAVTFFTKEDATNVKVVVNVMKQSGQEVPDWLNNLAPL 500          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RHLB_PSEA6 (ATP-dependent RNA helicase rhlB OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rhlB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 55/150 (36.67%), Postives = 87/150 (58.00%), Query Frame = -3
Query:  298 MNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 741
            M+ P  + V+ +  T   IK+  FY +   +E K+  L  L E     ++++F NT+   + + D +++  H V    GD+ QN R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G+ G +I+F
Sbjct:  210 MDNPTHVQVEPERKTGTRIKEELFYPS---DEDKMALLLSLMEEEWPDKAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISF 356          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RH11_ARATH (DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis thaliana GN=RH11 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 55/178 (30.90%), Postives = 98/178 (55.06%), Query Frame = -3
Query:  226 FMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQ-----SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 744
            FM+  + + V R   + + I Q  V   +E  K   L DL      TQ     +++FV T+R  D L + +   +   ++ HGD  Q  R++ +R F++G + +L+ TD+ ARG+D+  V+ V+N+DLP   ++Y+HRIGR+GR G+ G+A  F   ++ ++   + +      +E+P
Sbjct:  359 FMSNYIFLAVGRVGSSTDLITQ-RVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVP 535          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: PRP28_MAGGR (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Magnaporthe grisea GN=PRP28 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 50/148 (33.78%), Postives = 88/148 (59.46%), Query Frame = -3
Query:  256 TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 699
            T+E    + V+ ++   KL  + + Y T  +   ++FVNT+   D +   ++S   +    HG+  Q+ R+  ++ FR G + VL+ TD+ ARG+D+  VSLVIN+++    E Y HRIGR+GR G++G+AI F   +D  +L+ +++
Sbjct:  503 TVEQQAMWVVSEDERRNKLRAMLNTYGTGKLV--IVFVNTKSNCDAVAKDLKSSSFSAVTLHGNKTQDQREAALQSFRDGRTNVLVATDVAARGLDIPDVSLVINFNMAGTIEVYTHRIGRTGRAGKEGMAITFCGPEDHGVLYHLKQ 648          
The following BLAST results are available for this feature:
BLAST of DN621283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_ENCCU1.016e-2032.97ATP-dependent RNA helicase DBP2 OS=Encephalitozoon... [more]
RH24_ORYSJ1.327e-2031.02DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sa... [more]
PRP5_PICST1.327e-2033.16Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP5_CHAGB1.327e-2032.43Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DDX20_DICDI1.327e-2037.66Probable ATP-dependent RNA helicase ddx20 OS=Dicty... [more]
DBP10_COCIM1.327e-2036.24ATP-dependent RNA helicase DBP10 OS=Coccidioides i... [more]
ROK1_YARLI1.733e-2032.96ATP-dependent RNA helicase ROK1 OS=Yarrowia lipoly... [more]
RHLB_PSEA61.733e-2036.67ATP-dependent RNA helicase rhlB OS=Pseudoalteromon... [more]
RH11_ARATH1.733e-2030.90DEAD-box ATP-dependent RNA helicase 11 OS=Arabidop... [more]
PRP28_MAGGR1.733e-2033.78Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06I02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621283 ID=DN621283; Name=DN621283; organism=Citrus sinensis; type=EST; length=752bp
TTTTTTTTGCAATGTGCATGACCCATATGATTAAATGGTCGGATATGTTT
GAGAACAACATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACCAAA
AAAAAAAAAAAAAGGGGAGAAAAGAACCACCACATTAAACAGTACTTGCA
AAATCAGGAAACCCCTTCTTGCCTCGACAAACTTACAAAAACAGAACCTC
CTCAAAGAAGGTCAGCAACGTTTGAAGGCAGCTCCTCAATGACCACGTTA
TAGAACTTTTGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCACAAA
ATTAATGGCAACACCCTTTCTTCCAAATCGACCACTTCGTCCAATACGGT
GAAGGTAGTTTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAGTGAA
ACTTGCTGCACATCAATACCACGAGCCAACAGATCAGTGGTGATGAGAAC
ACGAGAAGAACCAGAGCGAAATTCACGCATAATGATATCTCGGGTGTTCT
GATCCATGTCCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCGCATC
TTGTCCGTAAGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGACACT
CTGGGTTATGGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGCTTCC
ATTCTTCCTTCTCAACATTGACATAAAATTGCTTGATACCCTCAAGGGTG
AGTTCATCACGTTTAACCAAGATTCTCACAGGCTTGTTCATAAACTTCCT
TG
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