DN621283

Overview
NameDN621283
Unique NameDN621283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP8_NEOFI (ATP-dependent RNA helicase dbp8 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.956e-20
Identity = 48/130 (36.92%), Postives = 80/130 (61.54%), Query Frame = -3
Query:  232 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 621
            E  A   ++IF N  +  D L   +R   H V++ H  + Q+ R+  +  FR+ ++R+L+ TD+ +RG+D+  VSLVINYD+P  P++Y+HR+GR+ R GR G AI  V + D +++  I++     +EE
Sbjct:  347 EDNASRPAIIFCNHTKTADLLERMLRRLTHRVTSLHSLLPQSERNANLARFRASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRSGEAITLVGQRDVQLVLAIEERVGRQMEE 476          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP8_EMENI (ATP-dependent RNA helicase dbp8 OS=Emericella nidulans GN=dbp8 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.956e-20
Identity = 45/119 (37.82%), Postives = 80/119 (67.23%), Query Frame = -3
Query:  256 ITQS-VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 609
            IT+S ++F NT +  D L   +RS  H V++ H  + Q+ R+  +  FR+ ++RVL+ TD+ +RG+D+  VSLV+N+++P  P++Y+HR+GR+ R GR G A+  V + D +++  I++
Sbjct:  349 ITKSAIVFTNTTKSADLLERLLRSLGHRVTSLHSLLPQSERNSNLARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRTGEAVTLVGQRDVQLVLAIEE 467          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP8_ASPFU (ATP-dependent RNA helicase dbp8 OS=Aspergillus fumigatus GN=dbp8 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.956e-20
Identity = 44/123 (35.77%), Postives = 79/123 (64.23%), Query Frame = -3
Query:  232 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 600
            +++F N  +  D L   +R   H V++ H  + Q+ R+  +  FR+ ++R+L+ TD+ +RG+D+  VSLVINYD+P  P++Y+HR+GR+ R GR+G A+  V + D +++  I++     +EE
Sbjct:  354 AIVFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANLARFRASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRRGEAVTLVGQRDVQLVLAIEERVGRQMEE 476          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: SRMB_ECOLI (ATP-dependent RNA helicase srmB OS=Escherichia coli (strain K12) GN=srmB PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 58/181 (32.04%), Postives = 90/181 (49.72%), Query Frame = -3
Query:  205 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 747
            + +  PV +         + I Q+Y   +  E K   L  L +    T+S++FV  R +V  L + +R          G+M Q  R+  ++    G   VL+ TD+ ARGID+  VS V N+D+P   + YLHRIGR+ R GRKG AI+ V   D  +L  + ++   + E + + V D L
Sbjct:  202 RLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRY---IEEPIKARVIDEL 379          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPA (ATP-dependent RNA helicase rhlB OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rhlB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 53/154 (34.42%), Postives = 88/154 (57.14%), Query Frame = -3
Query:  286 MNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 741
            MN+P ++ +  +E T + IK+  FY ++E+   K+  L  L E     ++++F NT+   + +   +    H      GD+ Q  R  I+ +F  G   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G+KGV+++F   +
Sbjct:  213 MNEPEKVEIAPNEKTSKNIKEEIFYPSMEE---KMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGDIDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEE 363          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RH29_ORYSJ (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. japonica GN=Os08g0416100 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 47/127 (37.01%), Postives = 77/127 (60.63%), Query Frame = -3
Query:  223 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 603
            Q++IFV+T+  V++L    R      S ++G MDQ  R+I + +FR+  + +LI TD+ ARG+D+  +  V+N+D P +P+ ++HR+GR  R GR G A  FVT +D   L D+  F +  +   P+
Sbjct:  294 QTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARKTMILIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYLLDLHLFLSKPLRPAPT 420          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RH29_ORYSI (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica GN=OsI_028228 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 47/127 (37.01%), Postives = 77/127 (60.63%), Query Frame = -3
Query:  223 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 603
            Q++IFV+T+  V++L    R      S ++G MDQ  R+I + +FR+  + +LI TD+ ARG+D+  +  V+N+D P +P+ ++HR+GR  R GR G A  FVT +D   L D+  F +  +   P+
Sbjct:  294 QTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARKTMILIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYLLDLHLFLSKPLRPAPT 420          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DED1_USTMA (ATP-dependent RNA helicase DED1 OS=Ustilago maydis GN=DED1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 57/175 (32.57%), Postives = 96/175 (54.86%), Query Frame = -3
Query:  226 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 750
            + F+ + V + V R   T E I Q    VE ++ +   L  L    +   ++IFV T+R  D L+D +       ++ HGD  Q  R+  +  FRSG + +++ T + ARG+D+  V+ V+NYDLP+  ++Y+HRIGR+GR G  G A  F  R ++ ++ D+ +      +E+P
Sbjct:  403 KDFLKEYVFLSVGRVGSTSENITQKIEYVEDDDKRSVLLDVLASMPSGGLTLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVRDLIELLKEANQEVP 577          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP8_VANPO (ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP8 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 54/144 (37.50%), Postives = 87/144 (60.42%), Query Frame = -3
Query:  232 KEEWKLETL-CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 660
            KE +  + L C+ Y+  ++   ++FVN     + L   +RS +  V++ H  M Q+ R   ++ FR+ ++RVLI TD+ ARG+D+  V LVINYD+P  P+ ++HR GR+ R GR G AI+FVT  D   +  I++  N  ++E
Sbjct:  239 KEAYLYQLLTCEDYKDSSV---IVFVNRTTAAEVLRRTLRSLEVRVASLHSQMPQSERINSLQRFRANAARVLIATDVAARGLDIPTVELVINYDIPQDPDTFIHRSGRTARAGRSGDAISFVTPRDVSRIEAIEERINKKMDE 379          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: PRP5_CRYNE (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus neoformans GN=PRP5 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.043e-20
Identity = 55/170 (32.35%), Postives = 91/170 (53.53%), Query Frame = -3
Query:  262 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT-------QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 750
            R+ + KP+ I V    +    I Q  V V   + K   L ++   +          +++IFV+ +   D L  ++  R +  ++ HG  +Q  RD  ++ F++G   +++ T + ARG+DV+++ LVINYD P   E+Y+HR GR+GR G KG  I F+T + ER   DI
Sbjct:  603 RRILVKPLEITVGGRSVVAPEIDQ-RVEVRDGDTKFTRLLEILGEMGEEHKDEDDFRTLIFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPEQERFSVDI 771          
The following BLAST results are available for this feature:
BLAST of DN621283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP8_NEOFI2.956e-2036.92ATP-dependent RNA helicase dbp8 OS=Neosartorya fis... [more]
DBP8_EMENI2.956e-2037.82ATP-dependent RNA helicase dbp8 OS=Emericella nidu... [more]
DBP8_ASPFU2.956e-2035.77ATP-dependent RNA helicase dbp8 OS=Aspergillus fum... [more]
SRMB_ECOLI3.861e-2032.04ATP-dependent RNA helicase srmB OS=Escherichia col... [more]
RHLB_SHEPA3.861e-2034.42ATP-dependent RNA helicase rhlB OS=Shewanella peal... [more]
RH29_ORYSJ3.861e-2037.01DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sa... [more]
RH29_ORYSI3.861e-2037.01DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sa... [more]
DED1_USTMA3.861e-2032.57ATP-dependent RNA helicase DED1 OS=Ustilago maydis... [more]
DBP8_VANPO3.861e-2037.50ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma... [more]
PRP5_CRYNE5.043e-2032.35Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06I02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621283 ID=DN621283; Name=DN621283; organism=Citrus sinensis; type=EST; length=752bp
TTTTTTTTGCAATGTGCATGACCCATATGATTAAATGGTCGGATATGTTT
GAGAACAACATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACCAAA
AAAAAAAAAAAAAGGGGAGAAAAGAACCACCACATTAAACAGTACTTGCA
AAATCAGGAAACCCCTTCTTGCCTCGACAAACTTACAAAAACAGAACCTC
CTCAAAGAAGGTCAGCAACGTTTGAAGGCAGCTCCTCAATGACCACGTTA
TAGAACTTTTGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCACAAA
ATTAATGGCAACACCCTTTCTTCCAAATCGACCACTTCGTCCAATACGGT
GAAGGTAGTTTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAGTGAA
ACTTGCTGCACATCAATACCACGAGCCAACAGATCAGTGGTGATGAGAAC
ACGAGAAGAACCAGAGCGAAATTCACGCATAATGATATCTCGGGTGTTCT
GATCCATGTCCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCGCATC
TTGTCCGTAAGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGACACT
CTGGGTTATGGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGCTTCC
ATTCTTCCTTCTCAACATTGACATAAAATTGCTTGATACCCTCAAGGGTG
AGTTCATCACGTTTAACCAAGATTCTCACAGGCTTGTTCATAAACTTCCT
TG
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