DN621283

Overview
NameDN621283
Unique NameDN621283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DDX3_DICDI (Probable ATP-dependent RNA helicase ddx3 OS=Dictyostelium discoideum GN=ddx3 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.043e-20
Identity = 52/152 (34.21%), Postives = 88/152 (57.89%), Query Frame = -3
Query:  226 QFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 681
            ++ V  +K  + L+ L  L         +IFV T+R  D LT  +  R+   +  HGD+ Q  R+  ++ FRS ++  L+ TD+ +RG+ +  V+LVIN+DLPT    Y+HRIGR+GR G+KG+AI+F    ++ +  ++ K      +++P
Sbjct:  483 EYVVEEDKNSYLLDYLSGLKSD---GLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMKASNQDIP 631          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP8_CANAL (ATP-dependent RNA helicase DBP8 OS=Candida albicans GN=DBP8 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.043e-20
Identity = 46/124 (37.10%), Postives = 78/124 (62.90%), Query Frame = -3
Query:  229 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL 600
            +VIFVN     + L   +R  D  V++ H +M Q+ R   +  F++G++R+LI TD+ +RG+D+  V LVIN+D+P  P++++HR+GR+ R GRKG A++ +   D   +  I++  N  +E L
Sbjct:  256 AVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIGEKDIDRIQSIEERINKKMELL 379          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RHLB_XANC5 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rhlB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 51/163 (31.29%), Postives = 88/163 (53.99%), Query Frame = -3
Query:  253 MNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 741
            MN+P +++V+ + +T   ++Q  +    +E K   L  L       ++++FVNT+  V+ +   +    + V    GD+ Q  R+ ++  F+ G   +L+ TD+ ARG+ +  V  V NYDLP   E+Y+HRIGR+ R G +G AI+F        L DI+ +
Sbjct:  214 MNEPEKLVVETESITAARVRQ-RIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RHLB_XANAC (ATP-dependent RNA helicase rhlB OS=Xanthomonas axonopodis pv. citri GN=rhlB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 51/163 (31.29%), Postives = 88/163 (53.99%), Query Frame = -3
Query:  253 MNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 741
            MN+P +++V+ + +T   ++Q  +    +E K   L  L       ++++FVNT+  V+ +   +    + V    GD+ Q  R+ ++  F+ G   +L+ TD+ ARG+ +  V  V NYDLP   E+Y+HRIGR+ R G +G AI+F        L DI+ +
Sbjct:  214 MNEPEKLVVETESITAARVRQ-RIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RHLB_SHEHH (ATP-dependent RNA helicase rhlB OS=Shewanella halifaxensis (strain HAW-EB4) GN=rhlB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 52/154 (33.77%), Postives = 88/154 (57.14%), Query Frame = -3
Query:  286 MNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 741
            MN+P ++ +  +E T + IK+  FY ++E+   K+  L  L E     ++++F NT+   + +   +    H      GD+ Q  R  I+ +F  G   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G+KG++++F   +
Sbjct:  213 MNEPEKVEIAPNEKTSKNIKEEIFYPSMEE---KMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGEIDILVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISVSFACEE 363          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 51/150 (34.00%), Postives = 85/150 (56.67%), Query Frame = -3
Query:  163 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL----L*GGSVFVSLSRQEG 600
            +++FV T+R+ D L   + S+    +A HGD  Q  R+  +R F++G + +++ TD+ +RG+DV  V+ VINYDLP   E+Y+HRIGR+GR G+ G A  F T  D  +   + +      +++P  +         GGS +   +R+ G
Sbjct:  354 TLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDHSLAKGLLELMTEAKQDVPDWLVQYAERPYYGGSSYGGRNRRSG 503          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RH24_ARATH (DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 61/187 (32.62%), Postives = 101/187 (54.01%), Query Frame = -3
Query:  208 RKFMNKPVRILVKRDELTLEGIKQFYVNV-----EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG-RKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 750
            R+ ++ P+R+ V    +  E I Q  VNV     EK  W LE L  + +   +   ++F + +  VD +  ++      V+A HGD DQ +R   +++F+SG   VLI TD+ ARG+D++ +  V+NYD+    + ++HRIGR+GR G R GVA   VT+ + R   ++        + +P  + DL
Sbjct:  425 REILSDPIRVTVGEVGMANEDITQV-VNVIPSDAEKLPWLLEKLPGMIDEGDV---LVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELTDL 607          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DED1_CRYNE (ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans GN=DED1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 62/185 (33.51%), Postives = 96/185 (51.89%), Query Frame = -3
Query:  208 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQS----VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 750
            R F+ + + + V R   T E I Q    V+ ++ K   L DL   L   QS    ++FV T+R  D L D + SR H  ++ HGD  Q  R+  +  F+SG + +L+ T + ARG+D+  V+ VI YDLP     Y HRIGR+GR G  G +  F  R +  +  D+ +      +E+P  + ++
Sbjct:  375 RSFLKEYIFLTVGRVGSTSENITQRVEYVDDQD-KRSLLLDL---LLAEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRIGRTGRAGNVGTSTAFFNRGNTNIGKDLIELLKEANQEVPQWLVEI 555          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP8_PICGU (ATP-dependent RNA helicase DBP8 OS=Pichia guilliermondii GN=DBP8 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 43/118 (36.44%), Postives = 74/118 (62.71%), Query Frame = -3
Query:  247 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 600
            +++FVN     + L   +R  D  V++ H +M Q+ R   +  FR+G++RVLI TD+ +RG+D+  V LV+N D+P  P++Y+HR+GR+ R G+KG +++ V+  D   +  I+   N
Sbjct:  256 AIVFVNRTYTAEILRRTLRKLDIRVASLHSEMPQSERTNSLHRFRAGAARVLIATDVASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIVSEKDVERILAIENHIN 373          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP8_PHANO (ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria nodorum GN=DBP8 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 54/151 (35.76%), Postives = 88/151 (58.28%), Query Frame = -3
Query:  256 TLEGIKQFYVN--VEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM-RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 699
            T   + Q Y+   V  +E  L  L  L   L +T+SVI    R K   L + M R  DH V+A H  + Q  R   +  FR+ ++R+L+ TD+ ARG+D+ +V LV+N+D+P  P++Y+HR+GR+ R GR G ++ F+ + D  ++  I++
Sbjct:  300 TPASLSQLYLQTPVTHKECYLHVL--LLTPLNLTKSVIIFCNRTKTATLLEYMLRMLDHRVTALHSGLKQQDRISNLARFRAQAARILVATDVAARGLDIPEVGLVVNFDVPRDPDDYIHRVGRTARAGRPGNSVTFIGQRDVELVLAIEE 448          
The following BLAST results are available for this feature:
BLAST of DN621283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX3_DICDI5.043e-2034.21Probable ATP-dependent RNA helicase ddx3 OS=Dictyo... [more]
DBP8_CANAL5.043e-2037.10ATP-dependent RNA helicase DBP8 OS=Candida albican... [more]
RHLB_XANC56.586e-2031.29ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]
RHLB_XANAC6.586e-2031.29ATP-dependent RNA helicase rhlB OS=Xanthomonas axo... [more]
RHLB_SHEHH6.586e-2033.77ATP-dependent RNA helicase rhlB OS=Shewanella hali... [more]
RH52A_ORYSJ6.586e-2034.00DEAD-box ATP-dependent RNA helicase 52A OS=Oryza s... [more]
RH24_ARATH6.586e-2032.62DEAD-box ATP-dependent RNA helicase 24 OS=Arabidop... [more]
DED1_CRYNE6.586e-2033.51ATP-dependent RNA helicase ded1 OS=Cryptococcus ne... [more]
DBP8_PICGU6.586e-2036.44ATP-dependent RNA helicase DBP8 OS=Pichia guillier... [more]
DBP8_PHANO6.586e-2035.76ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria n... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06I02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621283 ID=DN621283; Name=DN621283; organism=Citrus sinensis; type=EST; length=752bp
TTTTTTTTGCAATGTGCATGACCCATATGATTAAATGGTCGGATATGTTT
GAGAACAACATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACCAAA
AAAAAAAAAAAAAGGGGAGAAAAGAACCACCACATTAAACAGTACTTGCA
AAATCAGGAAACCCCTTCTTGCCTCGACAAACTTACAAAAACAGAACCTC
CTCAAAGAAGGTCAGCAACGTTTGAAGGCAGCTCCTCAATGACCACGTTA
TAGAACTTTTGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCACAAA
ATTAATGGCAACACCCTTTCTTCCAAATCGACCACTTCGTCCAATACGGT
GAAGGTAGTTTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAGTGAA
ACTTGCTGCACATCAATACCACGAGCCAACAGATCAGTGGTGATGAGAAC
ACGAGAAGAACCAGAGCGAAATTCACGCATAATGATATCTCGGGTGTTCT
GATCCATGTCCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCGCATC
TTGTCCGTAAGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGACACT
CTGGGTTATGGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGCTTCC
ATTCTTCCTTCTCAACATTGACATAAAATTGCTTGATACCCTCAAGGGTG
AGTTCATCACGTTTAACCAAGATTCTCACAGGCTTGTTCATAAACTTCCT
TG
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