DN621283
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DDX3_DICDI (Probable ATP-dependent RNA helicase ddx3 OS=Dictyostelium discoideum GN=ddx3 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.043e-20 Identity = 52/152 (34.21%), Postives = 88/152 (57.89%), Query Frame = -3 Query: 226 QFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 681 ++ V +K + L+ L L +IFV T+R D LT + R+ + HGD+ Q R+ ++ FRS ++ L+ TD+ +RG+ + V+LVIN+DLPT Y+HRIGR+GR G+KG+AI+F ++ + ++ K +++P Sbjct: 483 EYVVEEDKNSYLLDYLSGLKSD---GLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMKASNQDIP 631
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP8_CANAL (ATP-dependent RNA helicase DBP8 OS=Candida albicans GN=DBP8 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.043e-20 Identity = 46/124 (37.10%), Postives = 78/124 (62.90%), Query Frame = -3 Query: 229 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL 600 +VIFVN + L +R D V++ H +M Q+ R + F++G++R+LI TD+ +RG+D+ V LVIN+D+P P++++HR+GR+ R GRKG A++ + D + I++ N +E L Sbjct: 256 AVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIGEKDIDRIQSIEERINKKMELL 379
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RHLB_XANC5 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rhlB PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20 Identity = 51/163 (31.29%), Postives = 88/163 (53.99%), Query Frame = -3 Query: 253 MNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 741 MN+P +++V+ + +T ++Q + +E K L L ++++FVNT+ V+ + + + V GD+ Q R+ ++ F+ G +L+ TD+ ARG+ + V V NYDLP E+Y+HRIGR+ R G +G AI+F L DI+ + Sbjct: 214 MNEPEKLVVETESITAARVRQ-RIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RHLB_XANAC (ATP-dependent RNA helicase rhlB OS=Xanthomonas axonopodis pv. citri GN=rhlB PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20 Identity = 51/163 (31.29%), Postives = 88/163 (53.99%), Query Frame = -3 Query: 253 MNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 741 MN+P +++V+ + +T ++Q + +E K L L ++++FVNT+ V+ + + + V GD+ Q R+ ++ F+ G +L+ TD+ ARG+ + V V NYDLP E+Y+HRIGR+ R G +G AI+F L DI+ + Sbjct: 214 MNEPEKLVVETESITAARVRQ-RIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RHLB_SHEHH (ATP-dependent RNA helicase rhlB OS=Shewanella halifaxensis (strain HAW-EB4) GN=rhlB PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20 Identity = 52/154 (33.77%), Postives = 88/154 (57.14%), Query Frame = -3 Query: 286 MNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 741 MN+P ++ + +E T + IK+ FY ++E+ K+ L L E ++++F NT+ + + + H GD+ Q R I+ +F G +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G+KG++++F + Sbjct: 213 MNEPEKVEIAPNEKTSKNIKEEIFYPSMEE---KMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGEIDILVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISVSFACEE 363
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20 Identity = 51/150 (34.00%), Postives = 85/150 (56.67%), Query Frame = -3 Query: 163 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL----L*GGSVFVSLSRQEG 600 +++FV T+R+ D L + S+ +A HGD Q R+ +R F++G + +++ TD+ +RG+DV V+ VINYDLP E+Y+HRIGR+GR G+ G A F T D + + + +++P + GGS + +R+ G Sbjct: 354 TLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDHSLAKGLLELMTEAKQDVPDWLVQYAERPYYGGSSYGGRNRRSG 503
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: RH24_ARATH (DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20 Identity = 61/187 (32.62%), Postives = 101/187 (54.01%), Query Frame = -3 Query: 208 RKFMNKPVRILVKRDELTLEGIKQFYVNV-----EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG-RKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 750 R+ ++ P+R+ V + E I Q VNV EK W LE L + + + ++F + + VD + ++ V+A HGD DQ +R +++F+SG VLI TD+ ARG+D++ + V+NYD+ + ++HRIGR+GR G R GVA VT+ + R ++ + +P + DL Sbjct: 425 REILSDPIRVTVGEVGMANEDITQV-VNVIPSDAEKLPWLLEKLPGMIDEGDV---LVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELTDL 607
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DED1_CRYNE (ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans GN=DED1 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20 Identity = 62/185 (33.51%), Postives = 96/185 (51.89%), Query Frame = -3 Query: 208 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQS----VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 750 R F+ + + + V R T E I Q V+ ++ K L DL L QS ++FV T+R D L D + SR H ++ HGD Q R+ + F+SG + +L+ T + ARG+D+ V+ VI YDLP Y HRIGR+GR G G + F R + + D+ + +E+P + ++ Sbjct: 375 RSFLKEYIFLTVGRVGSTSENITQRVEYVDDQD-KRSLLLDL---LLAEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRIGRTGRAGNVGTSTAFFNRGNTNIGKDLIELLKEANQEVPQWLVEI 555
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP8_PICGU (ATP-dependent RNA helicase DBP8 OS=Pichia guilliermondii GN=DBP8 PE=3 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20 Identity = 43/118 (36.44%), Postives = 74/118 (62.71%), Query Frame = -3 Query: 247 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 600 +++FVN + L +R D V++ H +M Q+ R + FR+G++RVLI TD+ +RG+D+ V LV+N D+P P++Y+HR+GR+ R G+KG +++ V+ D + I+ N Sbjct: 256 AIVFVNRTYTAEILRRTLRKLDIRVASLHSEMPQSERTNSLHRFRAGAARVLIATDVASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIVSEKDVERILAIENHIN 373
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: DBP8_PHANO (ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria nodorum GN=DBP8 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20 Identity = 54/151 (35.76%), Postives = 88/151 (58.28%), Query Frame = -3 Query: 256 TLEGIKQFYVN--VEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM-RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 699 T + Q Y+ V +E L L L L +T+SVI R K L + M R DH V+A H + Q R + FR+ ++R+L+ TD+ ARG+D+ +V LV+N+D+P P++Y+HR+GR+ R GR G ++ F+ + D ++ I++ Sbjct: 300 TPASLSQLYLQTPVTHKECYLHVL--LLTPLNLTKSVIIFCNRTKTATLLEYMLRMLDHRVTALHSGLKQQDRISNLARFRAQAARILVATDVAARGLDIPEVGLVVNFDVPRDPDDYIHRVGRTARAGRPGNSVTFIGQRDVELVLAIEE 448 The following BLAST results are available for this feature:
BLAST of DN621283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN621283 ID=DN621283; Name=DN621283; organism=Citrus sinensis; type=EST; length=752bpback to top |