DN621283

Overview
NameDN621283
Unique NameDN621283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3)

HSP 1 Score: 254.603 bits (649), Expect = 4.210e-67
Identity = 126/181 (69.61%), Postives = 152/181 (83.98%), Query Frame = -3
Query:  205 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 747
            KFM  PVRILVK+DELTLEGIKQFYVNVE+EE+K E L DLY+++++TQ+VIF NTRRKV+ LT K+R+   TVSA + D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D   + +++KFY+  IEELPS++A LL
Sbjct:  214 KFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 394          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.210e-67
Identity = 126/181 (69.61%), Postives = 152/181 (83.98%), Query Frame = -3
Query:  205 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 747
            KFM  PVRILVK+DELTLEGIKQFYVNVE+EE+K E L DLY+++++TQ+VIF NTRRKV+ LT K+R+   TVSA + D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D   + +++KFY+  IEELPS++A LL
Sbjct:  214 KFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 394          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.210e-67
Identity = 122/180 (67.78%), Postives = 151/180 (83.89%), Query Frame = -3
Query:  208 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 747
            KFMN PVRILVK+DELTLEGIKQFY+NVE+E++K + LCDLY+++++TQ+VIF NTR KV++LT K++  + TVSA H D+ Q  RD IM EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I+KFY+  IEE+P+++  L
Sbjct:  216 KFMNNPVRILVKKDELTLEGIKQFYINVEQEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKGENFTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDQDVGMMREIEKFYSTQIEEMPADIGAL 395          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 9.379e-67
Identity = 122/181 (67.40%), Postives = 152/181 (83.98%), Query Frame = -3
Query:  205 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 747
            KFM KPVRIL+KRDELTL+GIKQF+V+VEKE+WK  TLCD+Y++L ITQ+VIF NT++KVD LT++MR  + TV++ HGDM Q  R+ I++ FRSG +RVLITTD+LARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINFV   D R+L DI++FY+  I+E+P N A ++
Sbjct:  225 KFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTLCDIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRDIEQFYSTQIDEMPVNFASII 405          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.225e-66
Identity = 121/180 (67.22%), Postives = 152/180 (84.44%), Query Frame = -3
Query:  208 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 747
            KFMN PVRILVK+DELTLEGIKQFY+NVE E++K + LCDLY+++++TQ+VIF NTR KV++LT K+++ + TVSA H D+ Q  RD IM+EFRSGSSR+LI TDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I++FY+  IEE+P+++  L
Sbjct:  216 KFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTERDVGMMREIEQFYSTQIEEMPADIGAL 395          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: FAL1_CHAGB (ATP-dependent RNA helicase FAL1 OS=Chaetomium globosum GN=FAL1 PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.600e-66
Identity = 122/163 (74.85%), Postives = 142/163 (87.12%), Query Frame = -3
Query:  259 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 747
            KFM  PVRILVKRDELTLEG+KQ+++ VEKE+WK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HGDM Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLP+  ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+
Sbjct:  220 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 382          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.729e-66
Identity = 120/180 (66.67%), Postives = 153/180 (85.00%), Query Frame = -3
Query:  208 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 747
            KFM  P+RILVK+DELTLEGIKQFY+NVE+E++K + L DLY+++++TQ+VIF NTRRKV+ LT K+   + TVS+ + D+ Q  RD+IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINFVT +D   + +I+KFY+  IEELP++VA++
Sbjct:  215 KFMRNPIRILVKKDELTLEGIKQFYINVEEEQYKFDCLSDLYDSISVTQAVIFCNTRRKVEELTQKLTESNFTVSSIYSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREIEKFYSTQIEELPADVAEM 394          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.655e-66
Identity = 119/181 (65.75%), Postives = 151/181 (83.43%), Query Frame = -3
Query:  205 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 747
            KF   PV+ILVKRD++TLEGIKQ+++  EKE+WK +TLCDLY++L ITQ+VIF NT+ KV+WLTD+M+  + TV A HGDM Q+ RD IM +FR+G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAIN VT++D   L DI++FY + I+E+P NV D++
Sbjct:  219 KFTTDPVKILVKRDDITLEGIKQYHIQCEKEDWKFDTLCDLYDSLTITQAVIFCNTKVKVNWLTDQMKKANFTVVAMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRSGRFGRKGVAINLVTKEDVDELRDIERFYRIRIKEMPVNVNDIM 399          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.079e-66
Identity = 117/181 (64.64%), Postives = 149/181 (82.32%), Query Frame = -3
Query:  205 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 747
            KF   PV+ILVKRD++TLEGIKQ++V  EKE+WK +TLCDLY+ L ITQ+VIF NT+ KV+WLTD+MR ++ TV + HGDM Q+ RD IM +FR+G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAIN +T++D   L D +K+Y+  I E+P N+ D++
Sbjct:  219 KFTTDPVKILVKRDQITLEGIKQYHVQCEKEDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGVAINLITKEDVATLRDFEKYYSTKIREMPMNINDIM 399          
BLAST of DN621283 vs. ExPASy Swiss-Prot
Match: FAL1_CANGA (ATP-dependent RNA helicase FAL1 OS=Candida glabrata GN=FAL1 PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.310e-65
Identity = 115/181 (63.54%), Postives = 151/181 (83.43%), Query Frame = -3
Query:  208 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 750
            +KFMN PV+ILVKRDE+TLEGIKQ+YVNVEKEEWK +TLCD+Y++L ITQ VIF N+++KVDWL  K++  +  V + HGDM Q+ RD +M EFR+G SRVLI+TD+ ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+T+ D   + +I+K+Y + ++ +P+++++L
Sbjct:  218 KKFMNDPVKILVKRDEITLEGIKQYYVNVEKEEWKFDTLCDIYDSLTITQCVIFCNSKKKVDWLAHKLKQSNFAVISMHGDMKQDERDRVMNEFRTGQSRVLISTDVWARGIDVQQVSLVINYDLPEITENYVHRIGRSGRFGRKGVAINFLTKIDASRMKEIEKYYKIKVKPMPADLSEL 398          
The following BLAST results are available for this feature:
BLAST of DN621283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_YEAST4.210e-6769.61ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_YEAS74.210e-6769.61ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_DEBHA4.210e-6767.78ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
IF4A_DICDI9.379e-6767.40Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
IF4A_PICST1.225e-6667.22ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
FAL1_CHAGB1.600e-6674.85ATP-dependent RNA helicase FAL1 OS=Chaetomium glob... [more]
IF4A_VANPO2.729e-6666.67ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]
FAL1_DEBHA4.655e-6665.75ATP-dependent RNA helicase FAL1 OS=Debaryomyces ha... [more]
FAL1_PICST6.079e-6664.64ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]
FAL1_CANGA2.310e-6563.54ATP-dependent RNA helicase FAL1 OS=Candida glabrat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06I02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621283 ID=DN621283; Name=DN621283; organism=Citrus sinensis; type=EST; length=752bp
TTTTTTTTGCAATGTGCATGACCCATATGATTAAATGGTCGGATATGTTT
GAGAACAACATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACCAAA
AAAAAAAAAAAAAGGGGAGAAAAGAACCACCACATTAAACAGTACTTGCA
AAATCAGGAAACCCCTTCTTGCCTCGACAAACTTACAAAAACAGAACCTC
CTCAAAGAAGGTCAGCAACGTTTGAAGGCAGCTCCTCAATGACCACGTTA
TAGAACTTTTGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCACAAA
ATTAATGGCAACACCCTTTCTTCCAAATCGACCACTTCGTCCAATACGGT
GAAGGTAGTTTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAGTGAA
ACTTGCTGCACATCAATACCACGAGCCAACAGATCAGTGGTGATGAGAAC
ACGAGAAGAACCAGAGCGAAATTCACGCATAATGATATCTCGGGTGTTCT
GATCCATGTCCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCGCATC
TTGTCCGTAAGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGACACT
CTGGGTTATGGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGCTTCC
ATTCTTCCTTCTCAACATTGACATAAAATTGCTTGATACCCTCAAGGGTG
AGTTCATCACGTTTAACCAAGATTCTCACAGGCTTGTTCATAAACTTCCT
TG
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