DN621271

Overview
NameDN621271
Unique NameDN621271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621271 vs. ExPASy Swiss-Prot
Match: ROS_MOUSE (Proto-oncogene tyrosine-protein kinase ROS OS=Mus musculus GN=Ros1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 62/181 (34.25%), Postives = 99/181 (54.70%), Query Frame = -1
Query:  218 MALDIARGVSYLHHCNPPIIHRDLKSSNLLVD-KHWT----VKVGDFGLSRLKHETYLTTKTGKGT--PQWMAPEVLRNEPSDEKSDVYSFGVILWELAT---EKIP-WDNLNSMQVIGAVGFMNQRLEIPKDVDPRWAAIVESCWHSDPQCRPSFQELVDKLRDLQRQYFQASRSTVGDS 727
            + +DI++G  YL   +   IHRDL + N LV  K +T    VK+GDFGL+R  ++     K G+G    +WMAPE L +     +SDV+SFG+++WE+ T   +  P   NL+ +  + A G    RLE P++       ++  CW  +P  RP+F  + ++L+ L R  F  + S  G++
Sbjct: 2052 LCVDISKGCVYLEQMH--FIHRDLAARNCLVSVKDYTSPRVVKIGDFGLAREIYKNDYYRKRGEGLLPVRWMAPENLMDGIFTSQSDVWSFGILVWEILTLGHQPYPAHSNLDVLNYVQAGG----RLEPPRNCPDDLWNLMSQCWAQEPDQRPTFHNIQNQLQ-LFRNVFLNNVSHCGEA 2225          
BLAST of DN621271 vs. ExPASy Swiss-Prot
Match: ROS_CHICK (Proto-oncogene tyrosine-protein kinase ROS OS=Gallus gallus GN=ROS1 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 60/181 (33.15%), Postives = 93/181 (51.38%), Query Frame = -1
Query:  227 MALDIARGVSYLHHCNPPIIHRDLKSSNLLVDKHW------TVKVGDFGLSRLKHETYLTTKTGKG--TPQWMAPEVLRNEPSDEKSDVYSFGVILWE-LATEKIPWDNLNSMQVIGAVGFMNQRLEIPKDVDPRWAAIVESCWHSDPQCRPSFQELVDKLRDLQR-----QYFQASRSTV 727
            + LDI +G  YL       IHRDL + N LV +         VK+GDFGL+R  ++     K G+G    +WMAPE L +      SDV++FGV++WE L   + P+  L++++V+  V     RLE P +       ++  CW  DP  RP+F  +  KL++++       YF   + +V
Sbjct: 2075 ICLDICKGCVYLEKMR--FIHRDLAARNCLVSEKQYGSCSRVVKIGDFGLARDIYKNDYYRKRGEGLINVRWMAPESLIDGVFTNHSDVWAFGVLVWETLTLGQQPYPGLSNIEVLHHVR-SGGRLESPNNCPDDIRDLMTRCWAQDPHNRPTFFYIQHKLQEIRHSPLCFSYFLGDKESV 2252          
BLAST of DN621271 vs. ExPASy Swiss-Prot
Match: PKPA_PHYBL (Serine/threonine-protein kinase pkpA OS=Phycomyces blakesleeanus GN=pkpA PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 50/148 (33.78%), Postives = 86/148 (58.11%), Query Frame = -1
Query:  278 IARGVSYLHHCNPPIIHRDLKSSNLLVD-KHWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPW-DNLNSMQVIGAVGFMNQRLEIPKDVDPRWAAIVESCWHSDPQCRPSFQELVD 715
            I +G++YLH   PPIIHRD+K  N+ ++  H  +K+GD G + +K+    T     GTP++MAPE+   +  +EK D+Y+FG+ L E+AT + P+ +  N++QV   V    +   + +  DP    +V  C   + + R + QE+++
Sbjct:  122 ILKGLAYLHGHEPPIIHRDIKCDNIFINGAHGEIKIGDMGTAEMKNGKKYTVI---GTPEFMAPEMYEEQGYNEKVDIYAFGMCLLEMATGEYPYGECTNAVQVFKKVTQTIKPECLSRVQDPELLTLVNICLTPEDE-RMTAQEILE 265          
BLAST of DN621271 vs. ExPASy Swiss-Prot
Match: NTRK1_CHICK (High affinity nerve growth factor receptor (Fragment) OS=Gallus gallus GN=NTRK1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 56/158 (35.44%), Postives = 85/158 (53.80%), Query Frame = -1
Query:  263 MALDIARGVSYLHHCNPPIIHRDLKSSNLLVDKHWTVKVGDFGLSRLKHETYLTTKTGKGTP--QWMAPEVLRNEPSDEKSDVYSFGVILWELAT-EKIPWDNLNSMQVIGAVGFMNQRLEIPKDVDPRWAAIVESCWHSDPQCRPSFQELVDKLRDL 727
            +A  IA G+ YL   +   +HRDL + N LV     VK+GDFG+SR  + T      G+     +WM PE +       +SD++SFGV+LWE+ T  K PW  L++ + I  +    + LE P+        I++SCW  +PQ R S Q++  +L+ L
Sbjct:  613 IATQIASGMVYLASLH--FVHRDLATRNCLVGHDLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECI-TQGRELERPRTCPSEVYDIMQSCWQREPQQR-SIQDIHSRLQAL 766          
BLAST of DN621271 vs. ExPASy Swiss-Prot
Match: LIMK1_RAT (LIM domain kinase 1 OS=Rattus norvegicus GN=Limk1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 65/172 (37.79%), Postives = 86/172 (50.00%), Query Frame = -1
Query:  260 ALDIARGVSYLHHCNPPIIHRDLKSSNLLVDKHWTVKVGDFGLSRL------KHETYLTTK--------TGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWE-LATEKIPWDNLNSMQVIG--AVGFMNQRLEIPKDVDPRWAAIVESCWHSDPQCRPSFQELVDKLRDLQ 724
            A DIA G++YLH  N  IIHRDL S N LV ++  V V DFGL+RL      + E   + K        T  G P WMAPE++     DEK DV+SFG++L E +       D L      G    GF+++    P +  P +  I   C   DP+ RPSF +L   L  L+
Sbjct:  441 AKDIASGMAYLHSMN--IIHRDLNSHNCLVRENRNVVVADFGLARLMIDEKGQSEDLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDR--YCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEQWLETLR 608          
BLAST of DN621271 vs. ExPASy Swiss-Prot
Match: LIMK1_MOUSE (LIM domain kinase 1 OS=Mus musculus GN=Limk1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 65/172 (37.79%), Postives = 86/172 (50.00%), Query Frame = -1
Query:  260 ALDIARGVSYLHHCNPPIIHRDLKSSNLLVDKHWTVKVGDFGLSRL------KHETYLTTK--------TGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWE-LATEKIPWDNLNSMQVIG--AVGFMNQRLEIPKDVDPRWAAIVESCWHSDPQCRPSFQELVDKLRDLQ 724
            A DIA G++YLH  N  IIHRDL S N LV ++  V V DFGL+RL      + E   + K        T  G P WMAPE++     DEK DV+SFG++L E +       D L      G    GF+++    P +  P +  I   C   DP+ RPSF +L   L  L+
Sbjct:  441 AKDIASGMAYLHSMN--IIHRDLNSHNCLVRENRNVVVADFGLARLMIDEKNQSEDLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDR--YCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEQWLETLR 608          
BLAST of DN621271 vs. ExPASy Swiss-Prot
Match: HCK_RAT (Tyrosine-protein kinase HCK OS=Rattus norvegicus GN=Hck PE=2 SV=4)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 50/152 (32.89%), Postives = 86/152 (56.58%), Query Frame = -1
Query:  266 IARGVSYLHHCNPPIIHRDLKSSNLLVDKHWTVKVGDFGLSRLKHETYLTTKTGKGTP-QWMAPEVLRNEPSDEKSDVYSFGVILWELAT-EKIPWDNLNSMQVIGAVGFMNQRLEIPKDVDPRWAAIVESCWHSDPQCRPSFQELVDKLRD 715
            I+ G++++   N   IHRDL+++N+LV      K+ DFGL+R+  +   T + G   P +W APE +       KSDV+SFG++L E+ T  +IP+  +++ +VI A+     R+  P +      +I+  CW + P+ RP+F+ +   L D
Sbjct:  363 ISEGMAFIEQRN--YIHRDLRAANILVSASLVCKIADFGLARIIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALEH-GYRMPRPDNCPEELYSIMIRCWKNRPEERPTFEYIQSVLDD 511          
BLAST of DN621271 vs. ExPASy Swiss-Prot
Match: EPHA8_MOUSE (Ephrin type-A receptor 8 OS=Mus musculus GN=Epha8 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 58/156 (37.18%), Postives = 75/156 (48.08%), Query Frame = -1
Query:  272 MALDIARGVSYLHHCNPPIIHRDLKSSNLLVDKHWTVKVGDFGLSRLKH---ETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWE-LATEKIPWDNLNSMQVIGAVGFMNQRLEIPKDVDPRWAAIVESCWHSDPQCRPSFQELVDKL 727
            M   +  G+ YL       IHRDL + N+LVD     KV DFGLSR      E   TT  GK   +W APE +        SDV+SFGV++WE LA  + P+ N+ +  VI +V     RL  P         ++  CWH D   RP F  +V  L
Sbjct:  739 MLRGVGAGMRYLSDLG--YIHRDLAARNVLVDGRLVCKVSDFGLSRALEDDPEAAYTTAGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNQDVISSVE-EGYRLPAPMGCPRALHQLMLDCWHKDRAQRPRFAHVVSVL 891          
BLAST of DN621271 vs. ExPASy Swiss-Prot
Match: VGFR2_MOUSE (Vascular endothelial growth factor receptor 2 OS=Mus musculus GN=Kdr PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 52/157 (33.12%), Postives = 81/157 (51.59%), Query Frame = -1
Query:  263 ALDIARGVSYLHHCNPPIIHRDLKSSNLLVDKHWTVKVGDFGLSR--LKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWEL-ATEKIPWDNLNSMQVIGAVGFMNQRLEIPKDVDPRWAAIVESCWHSDPQCRPSFQELVDKLRDL 724
            +  +A+G+ +L   +   IHRDL + N+L+ +   VK+ DFGL+R   K   Y+     +   +WMAPE + +     +SDV+SFGV+LWE+ +    P+  +   +          R+  P    P     +  CWH DP  RPSF ELV+ L +L
Sbjct: 1007 SFQVAKGMEFL--ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHEDPNQRPSFSELVEHLGNL 1161          
BLAST of DN621271 vs. ExPASy Swiss-Prot
Match: TESK2_RAT (Dual specificity testis-specific protein kinase 2 OS=Rattus norvegicus GN=Tesk2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 59/163 (36.20%), Postives = 91/163 (55.83%), Query Frame = -1
Query:  263 MALDIARGVSYLHHCNPPIIHRDLKSSNLLVDKH---WTVKVGDFGLSRLKHETYLTTK--TGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWE-LATEKIPWDNLNSMQVIGA--VGFMNQRLEIPKDVDPRWAAIVESCWHSDPQCRPSFQELVDKLRDL 727
            +A DIA G+SYLH     I HRDL S N L+ +    ++  V DFGL+    +  + ++     G+P WMAPEVLR+EP +EK+DV+S+G+IL E +A  +   D L   +  G     F +   + P D    +  +  +C + DP+ RPSF+E+   L ++
Sbjct:  156 LAYDIAVGLSYLHFKG--IFHRDLTSKNCLIKRDENGYSAVVADFGLAEKIPDASIGSEKLAVVGSPFWMAPEVLRDEPYNEKADVFSYGIILCEIIARIQADPDYLPRTENFGLDYDAFQHMVGDCPSD----FLQLTFNCCNMDPKLRPSFEEIGKTLEEI 312          
The following BLAST results are available for this feature:
BLAST of DN621271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ROS_MOUSE2.438e-1634.25Proto-oncogene tyrosine-protein kinase ROS OS=Mus ... [more]
ROS_CHICK2.438e-1633.15Proto-oncogene tyrosine-protein kinase ROS OS=Gall... [more]
PKPA_PHYBL2.438e-1633.78Serine/threonine-protein kinase pkpA OS=Phycomyces... [more]
NTRK1_CHICK2.438e-1635.44High affinity nerve growth factor receptor (Fragme... [more]
LIMK1_RAT2.438e-1637.79LIM domain kinase 1 OS=Rattus norvegicus GN=Limk1 ... [more]
LIMK1_MOUSE2.438e-1637.79LIM domain kinase 1 OS=Mus musculus GN=Limk1 PE=1 ... [more]
HCK_RAT2.438e-1632.89Tyrosine-protein kinase HCK OS=Rattus norvegicus G... [more]
EPHA8_MOUSE2.438e-1637.18Ephrin type-A receptor 8 OS=Mus musculus GN=Epha8 ... [more]
VGFR2_MOUSE3.184e-1633.12Vascular endothelial growth factor receptor 2 OS=M... [more]
TESK2_RAT3.184e-1636.20Dual specificity testis-specific protein kinase 2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06H20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621271 ID=DN621271; Name=DN621271; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATTTCTTTCATTGTCTGGTAGCTATGCGGCGCC
AATAGCACAAGCCTTTTGAGTGGCAAATCTGTTGTAACCAGCTGTTTACC
AGCCAAGAAAGTAAATCTTTTGTGAAAAATAATGCCTGATTCTTCTACTT
GCAATGACGTTGTTTCAGCAACGGAACAGGGAAACAATGTGAATATGGTC
TACAATTCCTTCTGGGTGCTATCTCCTACTGTTGATCGAGATGCCTGGAA
GTATTGTCTCTGCAGATCTCGAAGCTTGTCCACCAGTTCCTGGAATGATG
GCCTGCACTGTGGATCACTGTGCCAGCAGCTCTCAACTATAGCAGCCCAC
CGTGGATCCACATCTTTTGGGATCTCTAAGCGTTGGTTCATGAACCCTAC
AGCTCCAATCACCTGCATTGAGTTGAGATTATCCCAAGGGATCTTCTCAG
TGGCGAGCTCCCATAATATAACTCCAAAGCTGTATACATCAGACTTCTCA
TCGGAGGGTTCATTTCGGAGAACTTCCGGTGCCATCCATTGAGGAGTTCC
CTTCCCAGTCTTGGTGGTGAGATATGTCTCATGCTTCAGACGTGACAGAC
CAAAATCACCAACCTTGACAGTCCAGTGTTTATCAACTAGAAGATTTGAA
GACTTCAAATCGCGATGAATGATTGGTGGGTTGCAATGATGAAGATAACT
CACGCCACGTGCTATATCCAAAGCCAT
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