DN621264

Overview
NameDN621264
Unique NameDN621264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621264 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14
Identity = 53/191 (27.75%), Postives = 85/191 (44.50%), Query Frame = 1
Query:  142 GWQSGHATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG---GIRFTVNGHSYFNLVLITNVGGAGDVHSVSI-----KGSKTGWQAMSRN 666
            GW  G AT+Y              Y G++    + +  AA S +++ +G  CGSCY++KC  +P  C    + V  T+ CP         GG C     HFD++  AF  +A+         AG +P+ + R+PC  +G     R     + Y+  VL+ +  G GD+ +V +      G    W AM ++
Sbjct:   37 GWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CSGKPVTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQS 217          
BLAST of DN621264 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 54/188 (28.72%), Postives = 86/188 (45.74%), Query Frame = 1
Query:  145 WQSGHATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIA------QYR-AGIVPISFRRIPCAKKGGIRFT----VNGHSYFNLVLITNVGGAGDVHSVSI--KGSKTGWQAMSRN 666
            W +G AT+Y              Y G ++   + +  AA S +++ +GL CGSCY++KC  +   C    + V  T+ CP         GG C     HFD++  AF  +A      Q R AG++ I + R+PC   GG++ T    V  +  +  VL+    G GD+  V +   G+   W  M ++
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CSGNPVTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQS 213          
BLAST of DN621264 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.398e-12
Identity = 54/186 (29.03%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  142 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG-GIRFTVN--GHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRN 666
            GW +  AT+Y              Y     Q  + +  AA S +L+  G  CG+CYE+KC  +   C      V  T+ CP         GG C     HFDM+  +   +A+         AGI+ + +RR+PC   G  I F V+   + ++  VLI    G GD+++V +  +  GW  M +N
Sbjct:   63 GWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAA-CSGQPATVVITDECP---------GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQN 238          
BLAST of DN621264 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 54/187 (28.88%), Postives = 83/187 (44.39%), Query Frame = 1
Query:  118 GTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWC-LPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG-GIRFTV--NGHSYFNLVLITNVGGAGDVHSVSIKGSK 639
            G+ G  GGGW +  AT+Y               G  N+    +   T+  +  LF +G  CGSCY+++C   P    LP ++I+T  N+ P +              L HFD++  AF  +A+         AGI+ I FRR+PC   G  + F V    +  +  +L+    G GDV  V +  S+
Sbjct:   83 GSSGGGGGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPACSGLPETVIITDMNYYPVS--------------LYHFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSNPVYMAILVEYENGDGDVVQVDLMESR 255          
BLAST of DN621264 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.019e-11
Identity = 55/189 (29.10%), Postives = 84/189 (44.44%), Query Frame = 1
Query:  145 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIA------QYR-AGIVPISFRRIPCAKKGGIRFTV-----NGHSYFNLVLITNVGGAGDVHSVSI--KGSKTGWQAMSRN 666
            W +G AT+Y              Y     Q  + +  AA S +++ +GL CGSCY++KC  +   C    + V  T+ CP         GG C     HFD++  AF  +A      Q R AG++ I + R+PC   GG+  T      +  SYF  VL+    G GD+  + +   G+   W  M ++
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSA-CSGNPVTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVMLTFAVDAGSNPSYF-AVLVKYENGDGDLSGMDLMQTGAGAAWTPMQQS 213          
The following BLAST results are available for this feature:
BLAST of DN621264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
EXB14_ORYSJ1.494e-1427.75Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXB15_ORYSJ1.071e-1228.72Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB11_ORYSJ1.398e-1229.03Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB7_ORYSJ1.826e-1228.88Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB18_ORYSJ2.019e-1129.10Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06H15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621264 ID=DN621264; Name=DN621264; organism=Citrus sinensis; type=EST; length=666bp
CTTTTTCTTTACAAAAAAACACATAAACATAAGCAGCCAGCAGTAGCAGC
CATGACCAATATTGCAGCATCATCTAGTGTTGCTCTCCTTTTGTTTGTGC
TCAATTTTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTGGGTGGCAA
AGTGGCCATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGCACAATGGG
TGGTGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGGGACTAACA
CTGCAGCACTCAGTACCGCTCTATTCAACAATGGCCTAAGCTGTGGTTCA
TGCTATGAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTCCCCGGCTC
CATCATTGTCACCGCCACCAACTTCTGCCCACCTAACCTTGCCCTGTCTA
ACGACAACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTGACATGGCT
GAGCCCGCTTTCTTGCAAATTGCCCAATACCGCGCCGGTATCGTCCCAAT
TTCCTTCAGAAGGATCCCGTGTGCGAAGAAAGGAGGAATAAGGTTTACCG
TCAATGGACACTCATACTTCAACCTGGTTTTGATCACAAATGTCGGAGGA
GCAGGAGATGTACATTCAGTATCAATCAAGGGTTCAAAGACTGGATGGCA
AGCAATGTCAAGGAAC
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