DN621263

Overview
NameDN621263
Unique NameDN621263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.828e-49
Identity = 85/124 (68.55%), Postives = 104/124 (83.87%), Query Frame = -3
Query:  346 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 717
            GG C+PP  HFD+++P + +IA Y++GI+P+ +RR+ C + GGIRFT+NGHSYFNLVL+TNVGGAGDVHSVS+KGS+T WQ MSRNWGQNWQSNSYLNGQSLSF +T SD R+V S NV P  W
Sbjct:  119 GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTW 242          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.106e-48
Identity = 79/126 (62.70%), Postives = 103/126 (81.75%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            ++GGWCNPP QHFDMA+PA+ QI  YR GIVP++F+R+ C +KGG+RFT+NG+SYF LVLITNVGG G + SV IKG+KTGW  MSRNWG NWQ+N+YLN Q++SF +T++ G+T+   +V P NW
Sbjct:  112 NDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNW 237          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.106e-48
Identity = 84/126 (66.67%), Postives = 101/126 (80.16%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            +NGGWCNPPL+HFDMA+PA+ +I  YR GIVP+ F+R+ C KKGG+RF +NG  YF LV I NVGGAG + SVSIKGSKTGW AMSRNWG NWQSN+YL+GQ+LSF +T +DG T    NVVP +W
Sbjct:  115 NNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSW 240          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.553e-47
Identity = 83/126 (65.87%), Postives = 102/126 (80.95%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            D GGWCNPP +HFDM++PA+  IA YRAGIVP+++RR+PC + GGIRF VNGHSYF LVL+TNVGG+G V  + IKGS TGW AMSRNWG NWQSN+ L+GQ+LSF++ A DGR VT+ +V P  W
Sbjct:  113 DAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGW 238          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.460e-47
Identity = 81/126 (64.29%), Postives = 101/126 (80.16%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            ++GGWCNPP QHFDM++PA+  IA Y+AGIVP++++R+PC + GGIRF ++GH YF LV +TNVGG+G V  +SIKGS TGW AMSRNWG NWQSN+YL GQSLSF +   DGR VT+ NV P NW
Sbjct:  117 NSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNW 242          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.007e-46
Identity = 82/126 (65.08%), Postives = 99/126 (78.57%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            D GGWCNPP +HFDM++PA+  IA Y+AGIVP++F+R+PC K GGIRFT++G  YF LV + NVGG+G V  VSIKGSKT W AMSRNWGQNWQSN+YLN QSLSF++   D R VT  N+ P NW
Sbjct:  111 DAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNW 236          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.215e-45
Identity = 80/127 (62.99%), Postives = 101/127 (79.53%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            DNGGWCNPP  HFDMA+PAFL IA+Y+AGIVPI ++++ C + GG+RFT+NG +YF LVLI+NV G G++  V IKGSK+  W+ MSRNWG N+QSN+YLNGQSLSF++  SDG    + NVVP NW
Sbjct:  117 DNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNW 243          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.581e-44
Identity = 77/128 (60.16%), Postives = 100/128 (78.12%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK--TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            D+GGWCNPP  HFDMA+PA+ +I  YR GIVP++FRR+PC ++GG+RFTV G  YF LVL+TNV  AG V S+ ++GS+   GW AMSRNWG NWQS +YL+GQ LSF++TA+DG+T+    VVP +W
Sbjct:  123 DDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSW 250          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.042e-43
Identity = 76/127 (59.84%), Postives = 94/127 (74.02%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            DNGGWCNPP  HFDMA+PA+ +I  YRAGI+P+ ++R+PC KKGG+RFT+NGH YFNLVL+TNV   G + S+ I GS  T W  M RNWG NW S SYL GQ LSF++T  DG+T+   N+VP  W
Sbjct:  139 DNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 265          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 5.170e-43
Identity = 75/127 (59.06%), Postives = 94/127 (74.02%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            DNGGWCNPP  HFDMA+PA+ +I  Y AGI+P+ ++R+PC KKGG+RFT+NGH YFNLVL+TNV   G + S+ I GS  T W  M RNWG NW S SYL GQ+LSF++T  DG+T+   N+VP  W
Sbjct:  123 DNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGW 249          
The following BLAST results are available for this feature:
BLAST of DN621263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXPA5_ARATH4.828e-4968.55Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP12_ORYSJ9.106e-4862.70Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH9.106e-4866.67Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXPA8_ORYSJ1.553e-4765.87Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ORYSJ3.460e-4764.29Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP33_ORYSJ1.007e-4665.08Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH7.215e-4562.99Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP29_ORYSJ3.581e-4460.16Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ1.042e-4359.84Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ5.170e-4359.06Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06H15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621263 ID=DN621263; Name=DN621263; organism=Citrus sinensis; type=EST; length=725bp
TTTTTTTTTACACATTAAGATTGAAATTTTTTTTATCAATAAACTTTTAA
CTGATGTCTCAAATGATAACCAGAAATCACAACGCTGAATGAAATTATAC
CCGTTCATTCAATTGAAGTAATAACTATATATAGAACACAATCATTTCTA
TTTATAGAGGCCTAGCGGGTGCCAACAGACCACCACAGCAACAAGACAGG
CCACATCGGCCAGGCCTGAGCCTCACCTACCCCTATTCTCACCCTTCCTC
CCTCACAAACAGTGCCAAATTCAATTAAATATACAAATTCTGATTCACTT
TTTTAAAATCTAAAACTGACCACCCTCAAAGGTTTGCCCAAATTGCCAAT
TTCCAGGCACAACATTGTTGCTAGTCACAGTCCTGCCGTCACTGGCTGTC
AATTGGAAAGAAAGACTTTGGCCGTTAAGATAAGAATTGCTCTGCCAATT
TTGGCCCCAGTTCCTTGACATTGCTTGCCATCCAGTCTTTGAACCCTTGA
TTGATACTGAATGTACATCTCCTGCTCCTCCGACATTTGTGATCAAAACC
AGGTTGAAGTATGAGTGTCCATTGACGGTAAACCTTATTCCTCCTTTCTT
CGCACACGGGATCCTTCTGAAGGAAATTGGGACGATACCGGCGCGGTATT
GGGCAATTTGCAAGAAAGCGGGCTCAGCCATGTCAAAGTGCTGGAGGGGA
GGATTGCACCAACCGCCGTTGTCGT
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