DN621263

Overview
NameDN621263
Unique NameDN621263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.468e-39
Identity = 68/125 (54.40%), Postives = 99/125 (79.20%), Query Frame = -3
Query:  346 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTA-SDGRTVTSNNVVPGNW 717
            GGWCNPP  HFDMA+PAF+++A +RAGI+P+++RR+PC + GG+RF   G+SY+ L+ + NVGGAGD+ S+++KGS+T W +MS NWG ++Q+ S L GQSLSF++T+ + G T+ + NV P NW
Sbjct:  125 GGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANW 249          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.468e-39
Identity = 69/122 (56.56%), Postives = 92/122 (75.41%), Query Frame = -3
Query:  346 WCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 711
            WCNPP +HFD++   FL+IA+Y+AG+VP+ +RRIPC+K GG++F   G+ YF +VLI NVGGAGD+  V +KG+KTGW  M +NWGQNW + + L GQ LSF++T SDG T    NV+P NW
Sbjct:  140 WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNW 261          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.248e-38
Identity = 67/122 (54.92%), Postives = 92/122 (75.41%), Query Frame = -3
Query:  346 WCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 711
            WCNPP +HFD++   FL+IA+Y+AG+VP+ +RRIPC+K GG++F   G+ YF +VLI NVGGAGD+  V +K +KTGW  M +NWGQNW +++ L GQ LSF++T +DG T    NV+P NW
Sbjct:  146 WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNW 267          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.936e-38
Identity = 68/126 (53.97%), Postives = 92/126 (73.02%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            D GGWCNPP +HFDM++PA+ +I  YRAGIVP+ +RR+ C ++GG+RFTV G  +F LVL+ NV G+G V +VS++G+ TGW  MSRNWG NWQS + L GQ LSF +T + G+ +   +V P  W
Sbjct:  116 DGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGW 241          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.116e-37
Identity = 71/126 (56.35%), Postives = 92/126 (73.02%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            D GGWCNPP  HFDM++PA+ QI  Y+AGIVP+ ++R+ C ++GG+RFTV G +YF LVLITNV G+G V S  IKG+ TGW  MSRNWG NWQS + L GQ+LSF +T + G+ +   +V P  W
Sbjct:  117 DGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWW 242          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.457e-37
Identity = 71/126 (56.35%), Postives = 93/126 (73.81%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            D GG CNPP  HF +   +F +IA ++AG++PI +RR+ C + GG+RF V G S+F  VLI+NVGGAGDV SV IKG+++GW +M RNWGQ W  NS   GQ LSF+LT+SDG+T+T+ NVVP  W
Sbjct:  119 DAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEW 244          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.232e-37
Identity = 68/126 (53.97%), Postives = 92/126 (73.02%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            D GGWCN P +HF+M+E AFL++A+ +A IVP+ FRR+ C + GG+RFT+ G + F  VLITNV   G+V +V +KGS+TGW  M RNWGQNWQ ++ L GQ LSF++T   GRTV + +V P +W
Sbjct:  122 DYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDW 247          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.234e-36
Identity = 65/125 (52.00%), Postives = 91/125 (72.80%), Query Frame = -3
Query:  346 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 720
            N  WCNPP +HFD+++P FL+IA+Y+AG+VP+ FRR+PCAK GG++F + G+ +F ++L  NVGGAG V ++ IKG++T W AM +NWGQ W +   L GQ LSF+LT SDG      +V P +W
Sbjct:  175 NDNWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDW 299          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.234e-36
Identity = 67/127 (52.76%), Postives = 95/127 (74.80%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGR-TVTSNNVVPGNW 723
            +NGGWCNPP  HFD+ +PAF++IA ++AGI+P+S+RR+ C K GGIRF   G+ Y+ LV + NVGG GD+ ++++KGS+TGW  MS NWG ++Q+ S L GQSLSF+LT+   R T+ + N  P +W
Sbjct:  118 NNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASW 244          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.748e-36
Identity = 65/124 (52.42%), Postives = 91/124 (73.39%), Query Frame = -3
Query:  346 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 717
            GGWCN    HFDM++PA+  I  Y AGIVPI ++++ C + GG+RFT+ G +YF LVL+TN+ G+G + S+S+KGS TGW  MSRNWG NWQ  + L GQ+LSF +T++ G+T+  ++VVP  W
Sbjct:  112 GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGW 235          
The following BLAST results are available for this feature:
BLAST of DN621263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXPA7_ARATH3.468e-3954.40Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP22_ARATH3.468e-3956.56Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP26_ARATH2.248e-3854.92Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP27_ORYSJ2.936e-3853.97Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP31_ORYSJ1.116e-3756.35Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP10_ORYSJ1.457e-3756.35Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ7.232e-3753.97Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ARATH1.234e-3652.00Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP18_ARATH1.234e-3652.76Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP18_ORYSJ2.748e-3652.42Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06H15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621263 ID=DN621263; Name=DN621263; organism=Citrus sinensis; type=EST; length=725bp
TTTTTTTTTACACATTAAGATTGAAATTTTTTTTATCAATAAACTTTTAA
CTGATGTCTCAAATGATAACCAGAAATCACAACGCTGAATGAAATTATAC
CCGTTCATTCAATTGAAGTAATAACTATATATAGAACACAATCATTTCTA
TTTATAGAGGCCTAGCGGGTGCCAACAGACCACCACAGCAACAAGACAGG
CCACATCGGCCAGGCCTGAGCCTCACCTACCCCTATTCTCACCCTTCCTC
CCTCACAAACAGTGCCAAATTCAATTAAATATACAAATTCTGATTCACTT
TTTTAAAATCTAAAACTGACCACCCTCAAAGGTTTGCCCAAATTGCCAAT
TTCCAGGCACAACATTGTTGCTAGTCACAGTCCTGCCGTCACTGGCTGTC
AATTGGAAAGAAAGACTTTGGCCGTTAAGATAAGAATTGCTCTGCCAATT
TTGGCCCCAGTTCCTTGACATTGCTTGCCATCCAGTCTTTGAACCCTTGA
TTGATACTGAATGTACATCTCCTGCTCCTCCGACATTTGTGATCAAAACC
AGGTTGAAGTATGAGTGTCCATTGACGGTAAACCTTATTCCTCCTTTCTT
CGCACACGGGATCCTTCTGAAGGAAATTGGGACGATACCGGCGCGGTATT
GGGCAATTTGCAAGAAAGCGGGCTCAGCCATGTCAAAGTGCTGGAGGGGA
GGATTGCACCAACCGCCGTTGTCGT
back to top