DN621259

Overview
NameDN621259
Unique NameDN621259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3_DROME (Proteasome subunit beta type-3 OS=Drosophila melanogaster GN=Prosbeta3 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.957e-46
Identity = 85/158 (53.80%), Postives = 116/158 (73.42%), Query Frame = -3
Query:  248 RLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 718
            R+F+GL+GL TD  T+  RL+FR  LY+ RE R+M P+ F++++S+ LYE RFGPYF +PV+AGL  +  +PFIC MD IG      DFVVAGT  E LYG CE ++KPD+EPD+LFE ++Q+++++ DRD +SGWG  VYI+   +I ER LK RMD
Sbjct:   48 RMFLGLTGLQTDILTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLDPKTMEPFICNMDLIGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGATVYIIEKDKITERTLKTRMD 205          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3_BOVIN (Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 6.474e-46
Identity = 90/159 (56.60%), Postives = 121/159 (76.10%), Query Frame = -3
Query:  248 DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 721
            DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG G  V+I+   +I  R LK RMD
Sbjct:   47 DRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3_YEAST (Proteasome component PUP3 OS=Saccharomyces cerevisiae GN=PUP3 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.720e-44
Identity = 83/157 (52.87%), Postives = 119/157 (75.80%), Query Frame = -3
Query:  248 LFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 715
            +F+G++GLATD  TL +   ++  LY+L+EER ++PETF  LVS+ LYE+RFGPYF  PV+AG++ +  KPFI   D IG  + AKDF+V+GTA + L+G CE++++P++EP++LFET+SQALL++ DRD LSGWG  VYI+   E+ +R LK R D
Sbjct:   49 VFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD 205          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3_CAEEL (Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.397e-40
Identity = 70/158 (44.30%), Postives = 111/158 (70.25%), Query Frame = -3
Query:  248 DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 721
            D++++GL+G  +D++T+ ++++FR  LY+LRE R++KP+  + ++S L Y+ RFG YF +P++AGL D +KP+IC MD+IG     +DFV  GT  E L G CE  ++ +M+PDELFE  +Q++LS ++RD  SGWG  VY +T  ++    +K RMD
Sbjct:   47 DKVYVGLAGFQSDARTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWGAVVYTITKDKVNVSTIKARMD 204          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3_TRYBB (Proteasome subunit beta type-3 OS=Trypanosoma brucei brucei GN=PSB3 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.308e-38
Identity = 78/159 (49.06%), Postives = 114/159 (71.70%), Query Frame = -3
Query:  248 DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 721
            D + +GL+GL TD QT  Q++ FR ++Y+LREERD+  + FA+LVS++LYE RFGP+F +PVI  +  +  + ++C  D IGA    +D+V AGT  ESL+G CEA+++P +EP+ELFE  +QA+LS+ DRD LSG+G    IVT  ++  R++KGR D
Sbjct:   47 DGIVMGLTGLRTDQQTFAQKVNFRTEMYKLREERDINGKAFAALVSSMLYEARFGPWFVEPVIGTIDRKTGEVYLCATDLIGAPCEPEDYVCAGTCAESLHGMCEALWRPGLEPEELFEVAAQAMLSACDRDSLSGYGAVAAIVTKDKLVTRLIKGRKD 205          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3_GIALA (Proteasome subunit beta type-3 OS=Giardia lamblia GN=PRSBETA3 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.883e-31
Identity = 59/139 (42.45%), Postives = 90/139 (64.75%), Query Frame = -3
Query:  293 IGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIV 709
            +GL+GL TD  T Y+++  +  LY L+E+R+++P   A ++S+ LY+ RFGPYF  P+IAG   + KP++  MD+IG  +   +F +AGTA + L G CE   KPDM  DE+   + Q + S+ +RD  SGWG HV ++
Sbjct:   53 LGLAGLQTDVLTTYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAMDTIGCLDDCTNFQIAGTASDFLLGLCETHVKPDMSEDEILPLMEQIIRSATNRDAYSGWGAHVVVL 191          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.831e-14
Identity = 50/147 (34.01%), Postives = 73/147 (49.66%), Query Frame = -3
Query:  281 DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE 721
            DR+ +  +G   D+Q L + +     LY++R ER       A+L S LL   R+ PY  Q +I G+  E K  I ++D IG     KD V  G+   + YG  E  F P++  DE  E   +A+ S++ RD  SG G  V  +T  E
Sbjct:   50 DRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS-IYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDE 195          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 42/149 (28.19%), Postives = 76/149 (51.01%), Query Frame = -3
Query:  275 DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIK 721
            D + + ++G   D+Q + + L+   KLY++R  R++ P   A+L+S +L+  R  P+  Q +I G    +   + ++D +G     K F   G+     YG  EA +  DM  +E  +    AL S+++RD  SG G  + ++T   +K
Sbjct:   45 DYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVK 193          
The following BLAST results are available for this feature:
BLAST of DN621259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PSB3_DROME4.957e-4653.80Proteasome subunit beta type-3 OS=Drosophila melan... [more]
PSB3_BOVIN6.474e-4656.60Proteasome subunit beta type-3 OS=Bos taurus GN=PS... [more]
PSB3_YEAST2.720e-4452.87Proteasome component PUP3 OS=Saccharomyces cerevis... [more]
PSB3_CAEEL1.397e-4044.30Proteasome subunit beta type-3 OS=Caenorhabditis e... [more]
PSB3_TRYBB1.308e-3849.06Proteasome subunit beta type-3 OS=Trypanosoma bruc... [more]
PSB3_GIALA5.883e-3142.45Proteasome subunit beta type-3 OS=Giardia lamblia ... [more]
PSMB_ARCFU3.831e-1434.01Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSMB_METJA4.236e-1328.19Proteasome subunit beta OS=Methanocaldococcus jann... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06H13_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621259 ID=DN621259; Name=DN621259; organism=Citrus sinensis; type=EST; length=723bp
CCCTTTTTTTTTTAAGATCAAAACCTCAATTGATAGAAACGCTTTCATCC
ATCCAGATAACCGCAAGCCCACGAACTTGGTCAATTCAGTTTGAAACTAT
TTCAGAGTACAACAATTTGAGAGCTATTAAACAACATTCTTCATAAACAA
ATGAAAGTCAAGTTCAAGTCTACGGTCTTCTAATTGAAAAATACTGGAGA
GCGAACACAAGAGAAGGGGTGGCTTTCAGCACTGCAGTTATAGATCAATC
CATCCTTCCCTTCAAGATTCTTTCCTTTATTTCAGTTGGTGTTACAATGT
AGACATGTCCTCCCCAACCACTCAAACAGTCACGGTCAACAGATGATAAC
AAAGCTTGAGATACAGTTTCAAACAACTCATCGGGTTCCATATCAGGCTT
GAACATTGCCTCACAGGCACCATAAAGAGACTCTCCAGCAGTTCCAGCAA
CAACAAAATCTTTTGCAAGCTCCTTGGCTCCAATTGAGTCCATTGTGCAG
ATAAAGGGCTTGTCTTCATCACTCAATCCAGCAATAACAGGTTGACAGAA
GTAAGGGCCAAACCTTTTCTCATAAAGCAAAGCAGAGACTAAGCTAGCAA
AAGTTTCAGGCTTCATGTCCCTTTCCTCTCGCAGCTGATACAATTTGTGA
CGAAACACCAGCCTTTGATACAAGGTCTGGGAATCAGTGGCGAGTCCAGA
GAGGCCGATAAAAAGGCGATCGT
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