DN621256

Overview
NameDN621256
Unique NameDN621256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621256 vs. ExPASy Swiss-Prot
Match: CP26A_MOUSE (Cytochrome P450 26A1 OS=Mus musculus GN=Cyp26a1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 56/243 (23.05%), Postives = 112/243 (46.09%), Query Frame = 3
Query:    3 RYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYPPSKEKMIGPEALFFHQGAYHSRLKKLVQASFLPSAIRGSVSEIEQIVLKFLPTWKNATINTL---QEMKKYAFDVAMISAFGYQ-----HDLEMEGIKNLYQCIEKGYNSMPLDLPGTPYHKAIKAREQLNETLRRLIQK--RRESGKQIDG----LLGVLLAAKDQKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYL 689
            +YG I+KTH+ G P V +   +  + +L+ +  L    +P S   ++G   L     + H + KK++  +F   A++  V  I + V   L  W +     L    E+K+  F +AM    G +        + + +   ++ + +   S+P+D+P +  ++ +KAR  ++  +   I+   RR    + DG     L +L+    ++  +L    +  +   ++F  H+TTAS  T ++ YL
Sbjct:   74 KYGFIYKTHLFGRPTVRVMGADNVRRILLGEHRLVSVHWPASVRTILGAGCLSNLHDSSHKQRKKVIMQAFSREALQCYVLVIAEEVSSCLEQWLSCGERGLLVYPEVKRLMFRIAMRILLGCEPGPAGGGEDEQQLVEAFEEMTRNLFSLPIDVPFSGLYRGVKARNLIHARIEENIRAKIRRLQATEPDGGCKDALQLLIEHSWERGERLDMQALKQSSTELLFGGHETTASAATSLITYL 316          
BLAST of DN621256 vs. ExPASy Swiss-Prot
Match: C72B2_PINTA (Cytochrome P450 720B2 OS=Pinus taeda GN=CYP720B2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 56/234 (23.93%), Postives = 106/234 (45.30%), Query Frame = 3
Query:    3 RYGDIFKTHILGCPCVMIS-SPEAAKIVLVSKAHLFKPTYPPSKEKMIGPEALFFHQGAYHSRLK-KLVQASFLPSAIRGSVSEIEQIVLKFLPTWK-NATINTLQEMKKYAFDVAMISAFGYQHDLEMEGIKNLYQCIEKGYNSMPLDLPGTPYHKAIKAREQLNETLRRLIQKRRESGKQIDGLLGVLLAAKDQKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHD 695
            RYG+IF++++ G   +++S  PE  K VL  +   F+  YP     +IG   L    G    +L    V            + +I+ ++   L  W+    I+  +E  +   ++            + E I   +    +   ++P+ +PGT Y +  KARE L + +   I+ RR+  + +   L   L  +D      S+  IAD I+ ++FA H+T++  +++ +K+L D
Sbjct:   80 RYGEIFRSNLFGRSRIVVSVDPEFNKHVLQHEGRQFQANYPKPLRNLIGKYGLLSVHGDLQRKLHGAAVNLLRFERLSVDFMEDIQNLLHITLAKWEAKRDIHLQEECHQLVLNLMAKQLLDLSPSKDTEEICEAFGHFSEALLAVPIKIPGTKYARGFKAREFLIKKIYESIEDRRQHPEAVHNDLLTKLLKEDS----FSEEIIADFILFLLFAGHETSSRSMSFAIKFLTD 309          
BLAST of DN621256 vs. ExPASy Swiss-Prot
Match: C524A_DICDI (Probable cytochrome P450 524A1 OS=Dictyostelium discoideum GN=cyp524a1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 62/248 (25.00%), Postives = 114/248 (45.97%), Query Frame = 3
Query:    3 RYGDIFKTHILGCPCVMISSPEAAKIVLVSKAHLFKPTYPPSKEKMIGPEALFFHQGAYHSRLKKLVQASFLPSAIRGSVSEIEQIVLKFLPTW-KN--ATINTLQEMK--KYAFDVAMISAFGYQHDLEMEGIKNLYQCIEKGYNSMPLDLPGTPYHKAIKAREQLNETLRRLIQKRRE---SGKQIDGLLGV----LLAAKDQKLNQLSDSQIADNIIGVIFAAHDTTASVLTWVLKYLHDNQDLL 710
            +YG I  T I+    + ++  E  + V   K    K       +K++  +A+ F +GA H +L+K +   F   A+   +   E IV + +  W KN  A IN     +    A    +         +  +  KN +  + +G+  +P+DLPGT   KAI AR +L E    +I K R+    G++   L+ +     L   +++ ++LS+  I   ++  +FA+ D   S L W ++ + ++ D+L
Sbjct:  118 KYGPISWTSIMNKFVLFVTDAEINRQVF--KEENAKLYLSLGAKKILTEKAIPFIEGAPHRQLRKQLLPLFTIRALSSYLPIQESIVDEHIAMWIKNGKADINARNNCRDLNMAISTGVFVGNNTPESVRDDIAKNFF-VMNEGFLCLPIDLPGTTLRKAINARVRLVEIFTDIIAKSRKRMGDGEKPQSLIDLWVEHFLNCPEEERDELSNDTIIFTLLSFMFASQDALTSSLVWTVQLMAEHPDIL 362          
The following BLAST results are available for this feature:
BLAST of DN621256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
CP26A_MOUSE2.702e-1223.05Cytochrome P450 26A1 OS=Mus musculus GN=Cyp26a1 PE... [more]
C72B2_PINTA6.019e-1223.93Cytochrome P450 720B2 OS=Pinus taeda GN=CYP720B2 P... [more]
C524A_DICDI6.655e-1125.00Probable cytochrome P450 524A1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06H11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621256 ID=DN621256; Name=DN621256; organism=Citrus sinensis; type=EST; length=717bp
GTAGGTATGGGGATATATTTAAGACGCACATATTGGGGTGTCCATGTGTG
ATGATTTCAAGCCCCGAAGCAGCAAAGATTGTGCTAGTGTCAAAAGCACA
CTTGTTCAAGCCAACATATCCACCAAGCAAAGAAAAAATGATAGGCCCCG
AGGCTTTGTTCTTTCACCAAGGTGCATATCATTCGAGACTCAAGAAGTTG
GTTCAAGCTTCGTTTTTGCCCTCTGCAATACGAGGGTCGGTTTCAGAAAT
TGAGCAAATTGTTTTGAAATTTCTGCCTACATGGAAAAATGCAACCATCA
ACACTTTACAAGAAATGAAGAAGTATGCTTTTGATGTTGCAATGATTTCG
GCTTTTGGGTACCAACATGACTTGGAAATGGAAGGAATCAAGAATCTGTA
TCAATGCATAGAGAAAGGCTACAATTCTATGCCCTTAGATCTTCCAGGAA
CCCCGTATCACAAAGCAATTAAGGCAAGAGAGCAGCTGAATGAGACTTTG
AGGAGGTTGATTCAAAAGAGAAGAGAAAGTGGGAAGCAAATTGATGGATT
GTTGGGAGTTTTATTGGCAGCAAAAGATCAGAAGCTTAATCAACTCAGTG
ATTCTCAAATTGCTGATAATATAATTGGTGTCATCTTTGCTGCTCATGAT
ACAACTGCAAGTGTTTTAACATGGGTTCTTAAGTATTTGCATGATAATCA
GGATCTGCTGGACGCTG
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