DN621254

Overview
NameDN621254
Unique NameDN621254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN621254_ssr43 microsatellite DN621254_ssr43:43..64. BLAST: Citrus ESTs to Prunus persica proteins V1
DN621254_ssr30 microsatellite DN621254_ssr30:30..45. BLAST: Citrus ESTs to Prunus persica proteins V1
DN621254_ssr46 microsatellite DN621254_ssr46:46..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8379 contig Csv1_Contig8379:44..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN621254 vs. ExPASy Swiss-Prot
Match: 1433_ENCCU (14-3-3 protein homolog OS=Encephalitozoon cuniculi GN=ECU03_1010 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.755e-26
Identity = 76/187 (40.64%), Postives = 110/187 (58.82%), Query Frame = 2 
Query:  125 EQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAE----LTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATAS---ESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALIFSVFY 664
            E+ +  A L++ AERY++M + M+  V   T A E    L V  RNL SVAYKN++ S R++WR++ S  QK EG K+   V ++ E    VE+EL   C  +L ++   ++    A    E  +F+LKMKGDY+RY AE   G E    ++   +SYK A + A   L PT+PI+LGLAL +SVF+
Sbjct:    7 EEALQKANLSDMAERYDDMAKEMRLAV---TLAHEDKHILNVMARNLFSVAYKNLVSSRRSSWRMLCSERQKLEG-KDPSVVHVINEKIKVVEEELLRFCDEVLDIITTYILSLEEAQKNIEYNIFFLKMKGDYYRYKAEVVTGPEHSEVSKHAAESYKEATEKA-KTLPPTNPIKLGLALNYSVFH 188
[Close]
BLAST of DN621254 vs. ExPASy Swiss-Prot
Match: 1433G_SHEEP (14-3-3 protein gamma (Fragments) OS=Ovis aries GN=YWHAG PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.132e-21
Identity = 58/145 (40.00%), Postives = 76/145 (52.41%), Query Frame = 2 
Query:  230 LTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALIFSVFY 664
            L+ EERNLLSVAYKNV+G+ R++WR++SSIEQK                                                  FYLKMKGDY+RY+AE   G++R    E + ++Y  A +I+   + PTHPIRLGLAL +SVFY
Sbjct:   14 LSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTS------------------------------------------------FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFY 110
The following BLAST results are available for this feature:
BLAST of DN621254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
1433_ENCCU3.755e-2640.6414-3-3 protein homolog OS=Encephalitozoon cuniculi... [more]
1433G_SHEEP2.132e-2140.0014-3-3 protein gamma (Fragments) OS=Ovis aries GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06H10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621254 ID=DN621254; Name=DN621254; organism=Citrus sinensis; type=EST; length=665bp
CTGAATTTTCACAAATCGCAACGCAAGCCGTCTGTCTGTCTGTCTCTCTC
TCTCTCTCTCTCTCATCACACTTTCAGAGCCTGTGAAAAAGATGGCGACA
ACAGTTCCGGACAACCTGACGAGAGAGCAGTACGTGTACTTAGCCAAGCT
AGCCGAGCAAGCCGAGCGTTACGAAGAGATGGTGGAGTTCATGCAGAAGC
TGGTTGTCGGCTCGACTCCAGCCGCCGAGCTGACGGTCGAGGAGCGAAAC
CTCCTCTCAGTGGCCTACAAGAACGTAATCGGCTCACTCCGCGCCGCGTG
GCGCATCGTGTCGTCGATCGAGCAGAAGGAGGAGGGGAGGAAGAACGAGG
AACACGTGTCGCTCGTGAAAGAGTACAGATCGAAGGTGGAGAAGGAGCTT
TCGGATGTGTGCGCGAGTATTTTGAGGTTGTTGGAAGCGAATTTGATTCC
GTCGGCTACGGCGAGTGAGTCCAAAGTGTTTTATTTGAAAATGAAGGGAG
ATTATCATCGTTACATGGCCGAGTTTAAGATTGGCGATGAGCGGAAAGCC
GCCGCTGAAGACACTATGCAATCTTACAAAGCTGCTCAGGATATTGCTGG
GGCTGATCTCGCGCCGACGCATCCGATAAGGCTGGGATTGGCTCTCATTT
TCTCGGTGTTTTACT
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