DN621253

Overview
NameDN621253
Unique NameDN621253
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621253 vs. ExPASy Swiss-Prot
Match: 1433G_SHEEP (14-3-3 protein gamma (Fragments) OS=Ovis aries GN=YWHAG PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.690e-38
Identity = 89/191 (46.60%), Postives = 109/191 (57.07%), Query Frame = -2
Query:  243 VAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQD 815
            VAYKNV+G+ R++WR++SSIEQK                                                  FYLKMKGDY+RY+AE   G++R    E + ++Y  A +I+   + PTHPIRLGLALN+SVFYYEI             AF++AIAELDTL E+SYKDSTLIMQLLRDNLTLWTSD QD
Sbjct:   24 VAYKNVVGARRSSWRVISSIEQKTS------------------------------------------------FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEI------------TAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD 154          
BLAST of DN621253 vs. ExPASy Swiss-Prot
Match: 14338_ORYSJ (Putative 14-3-3-like protein GF14-H OS=Oryza sativa subsp. japonica GN=GF14H PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.039e-33
Identity = 77/189 (40.74%), Postives = 116/189 (61.38%), Query Frame = -2
Query:  249 VAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDV 815
            V +K  IG+ RA+WRI+ S+EQK      ++    +  Y+ KVE EL  VC  +L ++  + +P A + E+ VF+ KMKGDY+RY+AEF  G E+KAA + ++ +Y+A                   A  FS+   EI+N  ++A  +AKQA +EA AE+++ G E YKDS L+MQLL++NL LWTS++
Sbjct:   47 VGFKKTIGARRASWRILESLEQKVTA--GDQPGVTINGYKKKVEDELRAVCNEVLSIIAIHCLPLANSGENVVFFYKMKGDYYRYLAEFSTGTEKKAATDQSLMAYQA----------------WPCAQLFSLL--EIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSEL 215          
BLAST of DN621253 vs. ExPASy Swiss-Prot
Match: 1433X_MAIZE (14-3-3-like protein (Fragment) OS=Zea mays PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.569e-17
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = -2
Query:  243 ILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQD 404
            ILN  D+AC++AKQAF+EAI+ELD+LGEESYKDSTLIMQLL DNLTLWTSD  +
Sbjct:    1 ILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLXDNLTLWTSDTNE 54          
The following BLAST results are available for this feature:
BLAST of DN621253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
1433G_SHEEP4.690e-3846.6014-3-3 protein gamma (Fragments) OS=Ovis aries GN=... [more]
14338_ORYSJ2.039e-3340.74Putative 14-3-3-like protein GF14-H OS=Oryza sativ... [more]
1433X_MAIZE1.569e-1777.7814-3-3-like protein (Fragment) OS=Zea mays PE=3 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06H10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621253 ID=DN621253; Name=DN621253; organism=Citrus sinensis; type=EST; length=816bp
ATGAATATTATATACCAAGACTTGCNTGGTGTTAACATCAAGATCTAACC
TATTTAGACCATTTCAAAATATAAAAACAATATAAGTCTGAACATGCAAA
CATCATTTCATGGGTTTGATACCCATCTTTGAAATAACACACTTTTAAAC
AAAACAGACAAAATGACATTCAAAGCCCACCTCCTCCATAAGAAGAATAG
GACCGGTCAAGCTCACAGTGCTTTCTATGGCTCATCCAACTGGTCCTGCA
CATCCGAAGTCCAAAGAGTGAGGTTATCCCTTAGGAGTTGCATAATGAGG
GTGCTGTCCTTGTAGGATTCTTCTCCCAAAGTGTCTAACTCAGCAATTGC
TTCCTCAAATGCCTGCTTAGCCATGCTGCATGCCTTATCAGATTGATTGA
GAATCTCGTAGTAAAACACCGAGAAATTGAGAGCCAATCCCAGCCTTATC
GGATGCGTCGGCGCGAGATCAGCCCCAGCAATATCCTGAGCAGCTTTGTA
AGATTGCATAGTGTCTTCAGCGGCGGCTTTCCGCTCATCGCCAATCTTAA
ACTCGGCCATGTAACGATGATAATCTCCCTTCATTTTCAAATAAAACACT
TTGGACTCACTCGCCGTAGCCGACGGAATCAAATTCGCTTCCAACAACCT
CAAAATACTCGCGCACACATCCGAAAGCTCCTTCTCCACCTTCGATCTGT
ACTCTTTCACGAGCGACACGTGTTCCTCGTTCTTCCTCCCCTCCTCCTTC
TGCTCGATCGACGACACGATGCGCCACGCGGCGCGGAGTGAGCCGATTAC
GTTCTTGTAGGCCACT
back to top