DN621250

Overview
NameDN621250
Unique NameDN621250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621250 vs. ExPASy Swiss-Prot
Match: GPI8_MOUSE (GPI-anchor transamidase OS=Mus musculus GN=Pigk PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 58/179 (32.40%), Postives = 90/179 (50.28%), Query Frame = 1
Query:   58 ITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG 576
            +  L ALA ++ GS   AG I     +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G
Sbjct:   11 VATLAALALLSLGS-SAAGHI---EDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNARNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRVPPSTPRSKRLL-SDDRSNILIYMTGHGGNG 168          
BLAST of DN621250 vs. ExPASy Swiss-Prot
Match: GPI8_PONAB (GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.012e-15
Identity = 55/189 (29.10%), Postives = 92/189 (48.68%), Query Frame = 1
Query:   28 TMTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG 576
            +++R AS +   LL++   +A            +  +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G
Sbjct:    6 SLSRAASTLAAVLLLSFGSVAASH---------IEDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNG 168          
BLAST of DN621250 vs. ExPASy Swiss-Prot
Match: GPI8_YEAST (GPI-anchor transamidase OS=Saccharomyces cerevisiae GN=GPI8 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 45/122 (36.89%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  211 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH-PHGDDVY-KGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 570
            WAVL++ S  ++NYRH A++   Y+ +++ G+ D  II+ + DD+A N  N  PG + N+  H  D+Y   V  DY G +VTVENF  ++    T     S +++ +  N +IFI+ + HGG
Sbjct:   39 WAVLVSTSRFWFNYRHMANVLSMYRTVKRLGIPDSQIILMLSDDVACNSRNLFPGSVFNNKDHAIDLYGDSVEVDYRGYEVTVENFIRLLTDRWTEDHPKSKRLL-TDENSNIFIYMTGHGG 159          
BLAST of DN621250 vs. ExPASy Swiss-Prot
Match: GPI8_HUMAN (GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 56/184 (30.43%), Postives = 89/184 (48.37%), Query Frame = 1
Query:   43 ASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG 576
            A+ VL T+L+   G    S         +  +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G
Sbjct:   10 AATVLATVLLLSFGSVAASH--------IEDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNG 168          
BLAST of DN621250 vs. ExPASy Swiss-Prot
Match: GPI8_BOVIN (GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 45/128 (35.16%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  211 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG 576
            WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G   + T  S +++ S    +I I+ + HGG G
Sbjct:   46 WAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPSSTPRSKRLL-SDDRSNILIYMTGHGGNG 168          
BLAST of DN621250 vs. ExPASy Swiss-Prot
Match: GPI8_PIG (GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.909e-14
Identity = 45/128 (35.16%), Postives = 70/128 (54.69%), Query Frame = 1
Query:  211 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG 576
            WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY    VTVENF  V+ G     T  S +++ S    +I I+ + HGG G
Sbjct:   46 WAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDD----VEVDYRSYVVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNG 168          
BLAST of DN621250 vs. ExPASy Swiss-Prot
Match: GPI8_SCHPO (GPI-anchor transamidase OS=Schizosaccharomyces pombe GN=gpi8 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 42/131 (32.06%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  190 DDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVII-NHPHGDDVY-KGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG 576
            + S    WAVL++ S  ++NYRH A++   Y+ +++ G+ D  II+ + DD A N  N  PG +  N     D+Y + +  DY G +VTVE F  ++       T  S +++ +    +I I+ + HGG G
Sbjct:   20 ESSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPDSQIILMIADDYACNSRNLFPGTVFDNADRALDLYGEEIEIDYKGYEVTVEAFIRLLTERVPENTPASKRLL-TNERSNILIYMTGHGGDG 149          
The following BLAST results are available for this feature:
BLAST of DN621250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GPI8_MOUSE7.752e-1632.40GPI-anchor transamidase OS=Mus musculus GN=Pigk PE... [more]
GPI8_PONAB1.012e-1529.10GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE... [more]
GPI8_YEAST2.946e-1536.89GPI-anchor transamidase OS=Saccharomyces cerevisia... [more]
GPI8_HUMAN2.946e-1530.43GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE... [more]
GPI8_BOVIN2.946e-1535.16GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2... [more]
GPI8_PIG1.909e-1435.16GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2... [more]
GPI8_SCHPO5.200e-1232.06GPI-anchor transamidase OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06H08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621250 ID=DN621250; Name=DN621250; organism=Citrus sinensis; type=EST; length=577bp
CAGCAACCAATCAACCCCCTTCAAAAAACCATGACGCGCCTTGCCTCCGG
CGTGCTAATCACGCTCCTAGTCGCTCTTGCAGGAATCGCCGATGGAAGCA
GAGACATAGCAGGTGACATTCTGAAGCTACCATCGGAAGCCTATAGGTTC
TTCCATAATGGTGGGGGAGGGGCAAAGGTCAACGATGATGATGATTCTGT
CGGCACGAGATGGGCCGTCCTGCTTGCCGGATCTAATGGCTTCTGGAATT
ACAGGCATCAGGCTGATATTTGTCATGCTTATCAACTCTTGAGGAAAGGT
GGGCTGAAGGATGAAAATATTATTGTTTTCATGTATGATGACATCGCTTT
CAATGAAGAGAACCCAAGGCCTGGAGTCATCATTAACCACCCCCATGGCG
ATGATGTTTACAAAGGAGTTCCAAAGGATTACACGGGGGAAGATGTTACT
GTTGAAAACTTTTTTGCTGTTATCCTGGGAAATAAAACAGCTCTTACAGG
GGGCAGTGGGAAGGTTGTGGATAGCGGCCCCAATGATCATATTTTCATAT
TCTACTCAGATCATGGGGGCCCTGGGG
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