DN621247

Overview
NameDN621247
Unique NameDN621247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: SORCN_SCHJA (Sorcin OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21
Identity = 56/163 (34.36%), Postives = 89/163 (54.60%), Query Frame = -3
Query:  169 FQLADRDNSGLIDDKELQGALSS-YNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVLPFLI 654
            F   D D SG I   ELQ +LS+      ++RTV+L++  F       I   EF+ +F  +Q+W+  F + DRD SG ID NE   AL+S G  +SP  ++L++ +FD+  G   +I +D+FI  C+ ++ LT +F   D    G   F++E F+ +    +I
Sbjct:   12 FSRVDADKSGSISANELQTSLSNGLGTPLNIRTVQLMVAMFDRDMNGTINFNEFLGLFKYVQDWQTCFRRYDRDNSGSIDLNEFSNALISFGYHLSPQFVNLMMRRFDRNRG---SIAFDDFIYACVCLQTLTREFSRYDCRGIGHTVFSFEQFLTSAFAVII 171          
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: SORCN_PONAB (Sorcin OS=Pongo abelii GN=SRI PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.646e-18
Identity = 56/176 (31.82%), Postives = 91/176 (51.70%), Query Frame = -3
Query:  181 SFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-----QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVL 693
            +FP  T   +   F  A     G ID  ELQ  L+        + F+L T RL++       +  +G  EF +++  L  WR  F   D DRSG +D  EL++AL ++G  +SP  ++ +  ++  T GK   I +D++I CC+ ++ LT+ F+ RDT   G   F Y++F+  V+
Sbjct:   26 AFPGQTQDPLYGYFA-AVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY-STNGK---ITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 196          
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: SORCN_HUMAN (Sorcin OS=Homo sapiens GN=SRI PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.646e-18
Identity = 56/176 (31.82%), Postives = 91/176 (51.70%), Query Frame = -3
Query:  181 SFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-----QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVL 693
            +FP  T   +   F  A     G ID  ELQ  L+        + F+L T RL++       +  +G  EF +++  L  WR  F   D DRSG +D  EL++AL ++G  +SP  ++ +  ++  T GK   I +D++I CC+ ++ LT+ F+ RDT   G   F Y++F+  V+
Sbjct:   26 AFPGQTQDPLYGYFA-AVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY-STNGK---ITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 196          
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: SORCN_CRIGR (Sorcin OS=Cricetulus griseus GN=SRI PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.150e-18
Identity = 54/177 (30.51%), Postives = 94/177 (53.11%), Query Frame = -3
Query:  181 SFPPGTDPNIVACF-QLADRDNSGLIDDKELQGALSSYN-----QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVL 693
            SFP  T   +   F  +A +D  G ID  ELQ  L+        + F+L T RL++       +  +G  EF +++  L  WR  F   D DRSG +D  EL++AL ++G  ++P  ++ +  ++  +G     I +D++I CC+ ++ LT+ F+ RD+   G   F+Y++F+  V+
Sbjct:   26 SFPGQTQDPLYGYFASVAGQD--GQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSG----KITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQCVM 196          
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: SORCN_MOUSE (Sorcin OS=Mus musculus GN=Sri PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.255e-18
Identity = 53/176 (30.11%), Postives = 91/176 (51.70%), Query Frame = -3
Query:  181 SFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-----QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVL 693
            +FP  T   +   F  A     G ID  ELQ  L+        + F+L T RL++       +  +G  EF +++  L  WR  F   D DRSG +D  EL++AL ++G  +SP  ++ +  ++  +G     I +D++I CC+ ++ LT+ F+ RD+   G   F+Y++F+  V+
Sbjct:   26 AFPGQTQDPLYGYFA-AVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQTVNSVAKRYSTSG----KITFDDYIACCVKLRALTDSFRRRDSGQQGVVNFSYDDFIQCVM 196          
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: GRAN_PONAB (Grancalcin OS=Pongo abelii GN=GCA PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.255e-18
Identity = 49/150 (32.67%), Postives = 85/150 (56.67%), Query Frame = -3
Query:  193 GLIDDKELQGALSSYNQS-----FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 627
            G +D +ELQ  L+    S     FSL T R+++         K+G   F +++ +L  W+  F  VD+D SG ++ +ELR+A+  +G  +SP  L  +V ++ K G     I +D+++ CC+ ++ LT+ F++RD    GSA F Y++F+
Sbjct:   67 GEVDAEELQRCLTQSGISGTYSPFSLETCRIMIAMLDRDYTGKMGFNAFKELWSALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNG----RIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFL 212          
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: GRAN_HUMAN (Grancalcin OS=Homo sapiens GN=GCA PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.255e-18
Identity = 48/150 (32.00%), Postives = 85/150 (56.67%), Query Frame = -3
Query:  193 GLIDDKELQGALSSYN-----QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 627
            G +D +ELQ  L+          FSL T R+++      +  K+G   F +++ +L  W+  F  VD+D SG ++ +ELR+A+  +G  +SP  L  +V ++ K G     I +D+++ CC+ ++ LT+ F++RD    GSA F Y++F+
Sbjct:   66 GEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNG----RIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFL 211          
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: GRAN_MOUSE (Grancalcin OS=Mus musculus GN=Gca PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.393e-17
Identity = 52/172 (30.23%), Postives = 91/172 (52.91%), Query Frame = -3
Query:  193 SFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQS-----FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 693
            S+ P  D        +A +D  G +D +ELQ  L+    S     FSL T R+++         K+G  EF +++ +L  W+  F  +D+D+SG ++ +EL +A+  +G  +SP  L  +V ++ K G     I +D+++ CC+ ++ LT+ F+ RD    G   F YE+F+
Sbjct:   49 SYSPADDSMWTYFTAVAGQD--GEVDAEELQRCLTQSGISGTYAPFSLETCRIMIAMLDRDYTGKMGFNEFKELWAALNAWKQNFMTIDQDQSGTVEHHELSQAIALMGYRLSPQTLAAIVRRYSKNG----RIFFDDYVACCVKLRALTDFFRRRDHLQQGIVNFMYEDFL 214          
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: CANA_DROME (Calpain-A OS=Drosophila melanogaster GN=CalpA PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 48/156 (30.77%), Postives = 80/156 (51.28%), Query Frame = -3
Query:  193 DRDNSGLIDDKELQG------ALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 642
            D+ N  LI D    G      A+      FS    R ++       + K+G +EF  +   +  W+A+F+  D + +G++   +LREAL S G  ++  VL++L  ++    GK   I +D+FI C + +K   + FKERDT  + +ATFT E ++
Sbjct:  670 DQSNKRLIGDNPADGGPVTANAIVDETHGFSKDVCRSMVAMLDADKSGKLGFEEFETLLSEIAKWKAIFKVYDVENTGRVSGFQLREALNSAGYHLNNRVLNVLGHRYGSRDGK---IAFDDFIMCAVKIKTYIDIFKERDTEKNETATFTLEEWI 822          
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: CANB_DROME (Calpain-B OS=Drosophila melanogaster GN=CalpB PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 52/181 (28.73%), Postives = 88/181 (48.62%), Query Frame = -3
Query:  193 SFPPGT-----DPNIVACFQLADR--DNSGLIDDKELQGALSSY-------NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 693
            S PP T     DP  +A  +L D    +   +D +EL+  L          +  FS   VR ++       + ++G +EF  +   +  WRA+F+  D  R+G ID   LR AL S G  ++  +L+ L  ++   G +   I +D+F+ C + V+   E F+ERDT  S +A F  ++++
Sbjct:  742 SLPPPTPKEEDDPQRIALRRLFDSVAGSDEEVDWQELKRILDHSMRDVMVGSDGFSKDAVRSMVAMLDKDRSGRLGFEEFEALLTDIAKWRAVFKLYDTRRTGSIDGFHLRGALNSAGYHLNNRLLNALAHRY---GSREGQIPFDDFLMCAIKVRTFIEMFRERDTDNSDTAFFNLDDWL 919          
The following BLAST results are available for this feature:
BLAST of DN621247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SORCN_SCHJA4.628e-2134.36Sorcin OS=Schistosoma japonicum PE=2 SV=1[more]
SORCN_PONAB1.646e-1831.82Sorcin OS=Pongo abelii GN=SRI PE=2 SV=1[more]
SORCN_HUMAN1.646e-1831.82Sorcin OS=Homo sapiens GN=SRI PE=1 SV=1[more]
SORCN_CRIGR2.150e-1830.51Sorcin OS=Cricetulus griseus GN=SRI PE=1 SV=1[more]
SORCN_MOUSE6.255e-1830.11Sorcin OS=Mus musculus GN=Sri PE=1 SV=1[more]
GRAN_PONAB6.255e-1832.67Grancalcin OS=Pongo abelii GN=GCA PE=2 SV=1[more]
GRAN_HUMAN6.255e-1832.00Grancalcin OS=Homo sapiens GN=GCA PE=1 SV=2[more]
GRAN_MOUSE1.393e-1730.23Grancalcin OS=Mus musculus GN=Gca PE=2 SV=1[more]
CANA_DROME9.347e-1430.77Calpain-A OS=Drosophila melanogaster GN=CalpA PE=1... [more]
CANB_DROME8.749e-1228.73Calpain-B OS=Drosophila melanogaster GN=CalpB PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06H07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621247 ID=DN621247; Name=DN621247; organism=Citrus sinensis; type=EST; length=758bp
TTTTTTTTTATAAACAAACCATAACACTGATTTTATTTAACTAAGAGGTA
AACTACAGCCACGCAGCTTATCCACATTAAAACATCGAAAACACCTAAAA
CGTTACATCACATTCACACCAAATCCACGATTCAAAGTTATTAAACAACA
AATTTTAAAAACCTAAGCAATGAGGAATGGCAGAACAGCCAGCATGAAAT
TCTCGTAAGTGAAAGTTGCAGATCCAGAGTACGTAGTATCCCTCTCCTTA
AATTTCTCCGTTAACCCCTTAACCGTGAGACAGCACTCGATGAAGTTATC
ATATTCAATGGCCTTGCTTTTGCCACCAGTTTTGTCAAACTTAGTGACAA
GCAAGTCCAATACCACGGGTGAAACCGCAAGACCTAGACTCATAAGAGCC
TCCCGCAACTCATTCGTATCAATCTTTCCACTCCTGTCCCTGTCCACTTT
CTCAAACATGGCCCTCCAGTTTTGAAGACTGTGAAACACTTGGATGAACT
CCTTAGGCCCGATTTTTCTCGCGTTAGTGTTGGTGAATGTGTACATAAGC
AGACGAACGGTTCTCAAGCTGAAGCTCTGATTGTAAGAAGACAAGGCTCC
TTGCAACTCCTTATCGTCGATGAGGCCGCTGTTGTCCCGGTCGGCCAACT
GGAAGCACGCCACGATGTTCGGATCCGTTCCGGGAGGGAAACTGGACGGC
ATTAGAGATGCAAACGGATTACCGTACGATCCCGGAGCCGGCGGATAGCC
GCCTGGAG
back to top