DN621247

Overview
NameDN621247
Unique NameDN621247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: CAN11_RAT (Calpain 11 OS=Rattus norvegicus GN=Capn11 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 46/159 (28.93%), Postives = 87/159 (54.72%), Query Frame = -3
Query:  220 DPNIVACFQ-LADRDNS-GLIDDKELQGALSSYNQSF-----SLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGS 675
            D N V  F+ LA+RD+   + D ++L   +SS  +SF     SL   R ++      ++ K+G  EF  ++  ++ W  +F++ D+DRSG +++ E+R A+   G+ ++  V +++V ++      +  +++DNFI C L +K +   F   DT  +GS
Sbjct:  546 DQNSVELFETLANRDSQVDMYDLQKLLNKMSSKVKSFKSKGFSLDVCRRMVNLMDKDDSGKLGLHEFHILWKKIKKWMEIFKECDQDRSGNLNSYEMRLAIEKAGIRMNNRVTEVVVARY---ADANMIVDFDNFINCFLRLKAMFAFFLSMDTKKTGS 701          
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: CAN1_RABIT (Calpain-1 catalytic subunit (Fragment) OS=Oryctolagus cuniculus GN=CAPN1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 47/164 (28.66%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  211 DPNIVACF-QLADRDNSGLIDDKELQGALSSYN--------QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATF 675
            D N  A F QLA  D    I  +ELQ  L+           + FS+ + R ++         K+G  EF  +++ ++N+ A+F K D D+SG +   E+R A+ S G  ++  + +L++T++ +      A+++DNF+ C + ++ +   FK  DT   G  TF
Sbjct:  132 DENFKALFRQLAGEDLE--ISVRELQTILNRITSKHKDLRTKGFSMESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLAIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLYELIITRYSE---PDLAVDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTF 290          
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: CAN1_MACFA (Calpain-1 catalytic subunit OS=Macaca fascicularis GN=CAPN1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 47/164 (28.66%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  211 DPNIVACF-QLADRDNSGLIDDKELQGALSSY--------NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATF 675
            D N  A F QLA  D    I  KEL+  L+           + FSL + R ++         K+G  EF  +++ ++N+ ++F K D D+SG +   E+R A+ S G  ++  + +L++T++ +      A+++DNF+ C + ++ +   FK  DT   G  TF
Sbjct:  544 DENFKALFRQLAGEDME--ISVKELRTILNRIISKHKDLRTKGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLYELIITRYSE---PDLAVDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTF 702          
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: CAN1_HUMAN (Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 47/164 (28.66%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  211 DPNIVACF-QLADRDNSGLIDDKELQGALSSY--------NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATF 675
            D N  A F QLA  D    I  KEL+  L+           + FSL + R ++         K+G  EF  +++ ++N+ ++F K D D+SG +   E+R A+ S G  ++  + +L++T++ +      A+++DNF+ C + ++ +   FK  DT   G  TF
Sbjct:  544 DENFKALFRQLAGEDME--ISVKELRTILNRIISKHKDLRTKGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLYELIITRYSE---PDLAVDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTF 702          
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: CAN2_CHICK (Calpain-2 catalytic subunit OS=Gallus gallus GN=CAPN2 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 41/163 (25.15%), Postives = 88/163 (53.99%), Query Frame = -3
Query:  193 GTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 681
            G+D  I A F+L    N  L   ++++      +  FS+ T ++++    N  + K+G KEF  ++  +Q ++ ++ ++D DRSG +++ E+R AL + G  +S  +  ++V +F     +   I++DN + C + ++ L + F++ DT  +G+      N++
Sbjct:  543 GSDAEISA-FELRSILNKILAKRQDIK------SDGFSIETCKIMVDLLDNDGSGKLGLKEFHTLWTKIQKYQKIYREIDVDRSGTMNSYEMRRALEAAGFKLSCQLHQIIVARF---ADEDLIIDFDNCVRCLIRLETLYKMFRKLDTEKTGTIELNLINWL 695          
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: CAN1_PONAB (Calpain-1 catalytic subunit OS=Pongo abelii GN=CAPN1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 46/164 (28.05%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  211 DPNIVACF-QLADRDNSGLIDDKELQGALSSY--------NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATF 675
            D N  A F QLA  D    +  KEL+  L+           + FSL + R ++         K+G  EF  +++ ++N+ ++F K D D+SG +   E+R A+ S G  ++  + +L++T++ +      A+++DNF+ C + ++ +   FK  DT   G  TF
Sbjct:  544 DENFKALFRQLAGEDMETSV--KELRTILNRIISKHKDLRTKGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLYELIITRYSE---PDLAVDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTF 702          
BLAST of DN621247 vs. ExPASy Swiss-Prot
Match: CAN1_PIG (Calpain-1 catalytic subunit OS=Sus scrofa GN=CAPN1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 46/164 (28.05%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  211 DPNIVACF-QLADRDNSGLIDDKELQGALSSY--------NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATF 675
            D N  A F QLA  D    I  +EL+  L+           + FSL + R ++         K+G  EF  +++ ++N+ ++F K D D+SG +   E+R A+ S G  ++  + +L++T++ +      A+++DNF+ C + ++ +   FK  DT   G  TF
Sbjct:  544 DENFKALFRQLAGEDME--ISVRELRTILNRIISKHKDLRTKGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLFELIITRYSE---PDLAVDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTF 702          
The following BLAST results are available for this feature:
BLAST of DN621247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
CAN11_RAT1.143e-1128.93Calpain 11 OS=Rattus norvegicus GN=Capn11 PE=2 SV=... [more]
CAN1_RABIT2.545e-1128.66Calpain-1 catalytic subunit (Fragment) OS=Oryctola... [more]
CAN1_MACFA3.324e-1128.66Calpain-1 catalytic subunit OS=Macaca fascicularis... [more]
CAN1_HUMAN3.324e-1128.66Calpain-1 catalytic subunit OS=Homo sapiens GN=CAP... [more]
CAN2_CHICK4.342e-1125.15Calpain-2 catalytic subunit OS=Gallus gallus GN=CA... [more]
CAN1_PONAB5.671e-1128.05Calpain-1 catalytic subunit OS=Pongo abelii GN=CAP... [more]
CAN1_PIG5.671e-1128.05Calpain-1 catalytic subunit OS=Sus scrofa GN=CAPN1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06H07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621247 ID=DN621247; Name=DN621247; organism=Citrus sinensis; type=EST; length=758bp
TTTTTTTTTATAAACAAACCATAACACTGATTTTATTTAACTAAGAGGTA
AACTACAGCCACGCAGCTTATCCACATTAAAACATCGAAAACACCTAAAA
CGTTACATCACATTCACACCAAATCCACGATTCAAAGTTATTAAACAACA
AATTTTAAAAACCTAAGCAATGAGGAATGGCAGAACAGCCAGCATGAAAT
TCTCGTAAGTGAAAGTTGCAGATCCAGAGTACGTAGTATCCCTCTCCTTA
AATTTCTCCGTTAACCCCTTAACCGTGAGACAGCACTCGATGAAGTTATC
ATATTCAATGGCCTTGCTTTTGCCACCAGTTTTGTCAAACTTAGTGACAA
GCAAGTCCAATACCACGGGTGAAACCGCAAGACCTAGACTCATAAGAGCC
TCCCGCAACTCATTCGTATCAATCTTTCCACTCCTGTCCCTGTCCACTTT
CTCAAACATGGCCCTCCAGTTTTGAAGACTGTGAAACACTTGGATGAACT
CCTTAGGCCCGATTTTTCTCGCGTTAGTGTTGGTGAATGTGTACATAAGC
AGACGAACGGTTCTCAAGCTGAAGCTCTGATTGTAAGAAGACAAGGCTCC
TTGCAACTCCTTATCGTCGATGAGGCCGCTGTTGTCCCGGTCGGCCAACT
GGAAGCACGCCACGATGTTCGGATCCGTTCCGGGAGGGAAACTGGACGGC
ATTAGAGATGCAAACGGATTACCGTACGATCCCGGAGCCGGCGGATAGCC
GCCTGGAG
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