DN621246

Overview
NameDN621246
Unique NameDN621246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621246 vs. ExPASy Swiss-Prot
Match: NDK1_PARUW (Nucleoside diphosphate kinase 1 OS=Protochlamydia amoebophila (strain UWE25) GN=ndk1 PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.138e-26
Identity = 56/133 (42.11%), Postives = 84/133 (63.16%), Query Frame = 3
Query:   48 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PD 443
            EQT  +IKPD VQ   +GEII RFE+ G  +  +K+ T+ +  A K Y     +PF+  L+ +++SGPVV M+ EG   +   R ++GAT+P ++  GT+R D A    RN +HGSDS E+A++E+  +F PD
Sbjct:    4 EQTLSIIKPDAVQNNYIGEIISRFEQAGLKIAAIKMTTLTKDQASKFYAIHKDRPFYNDLVNFMSSGPVVVMVLEGNQAIAKNRELMGATDPKKAEKGTLRADFAESMSRNAVHGSDSSETAEEEVLFFFKPD 136          
BLAST of DN621246 vs. ExPASy Swiss-Prot
Match: NDK_METCA (Nucleoside diphosphate kinase OS=Methylococcus capsulatus GN=ndk PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.404e-26
Identity = 56/131 (42.75%), Postives = 80/131 (61.07%), Query Frame = 3
Query:   45 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 437
            +E+T  +IKPD V + ++GEI  RFEK G  +   K+  + R  AE  Y     +PFF  L+ ++ SGPV+  + EGE  +   R ++GATNP  +APGTIR D A+    N +HGSD  E+A +EIA +F
Sbjct:    3 VERTLSIIKPDAVAKNVIGEIYSRFEKAGLRIVAAKMAQLSREQAEGFYAVHRERPFFNDLVSFMISGPVMIQVLEGENAIAKNRELMGATNPRDAAPGTIRADFAVSIDENAVHGSDGPETAAQEIAYFF 133          
BLAST of DN621246 vs. ExPASy Swiss-Prot
Match: NDK_CHLFF (Nucleoside diphosphate kinase OS=Chlamydophila felis (strain Fe/C-56) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.404e-26
Identity = 59/131 (45.04%), Postives = 83/131 (63.36%), Query Frame = 3
Query:   45 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 437
            MEQT  +IKPD V +  +GEI+  FEK GF +  +K++ +    AE  Y    S+PFF  L++++ SGPVV M+ EG+  V   R I+GATNP ++A GTIR       G N +HGSDS+E+A  EI+ +F
Sbjct:    1 MEQTLSIIKPDSVGKAHIGEIVAIFEKAGFRIAAMKMVHLSAKEAEGFYAVHKSRPFFQELVDFMISGPVVVMVLEGDNAVVRNREIMGATNPQEAAQGTIRAQFGESIGINAVHGSDSLENAAIEISYFF 131          
BLAST of DN621246 vs. ExPASy Swiss-Prot
Match: NDK_CAMC1 (Nucleoside diphosphate kinase OS=Campylobacter concisus (strain 13826) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.404e-26
Identity = 57/131 (43.51%), Postives = 83/131 (63.36%), Query Frame = 3
Query:   45 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 437
            M++T  +IKPD V++ +VG+II RFE  G  +   K + + +  A+  Y     +PFF  L++++ SGPVV M+ EGE  V   R ++GATNP ++APGTIR D A     N +HGSDS+E+A  EI  +F
Sbjct:    1 MQRTLSIIKPDAVKKNVVGKIIDRFESNGLRIAAAKKIKLSKCDAKAFYAVHKDRPFFNDLVDFMVSGPVVVMVLEGENAVAKNRELMGATNPKEAAPGTIRADFADSIDANAVHGSDSLENAVNEINFFF 131          
BLAST of DN621246 vs. ExPASy Swiss-Prot
Match: NDK_ACIAD (Nucleoside diphosphate kinase OS=Acinetobacter sp. (strain ADP1) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.404e-26
Identity = 61/131 (46.56%), Postives = 80/131 (61.07%), Query Frame = 3
Query:   45 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 437
            +E+T  +IKPD V +  +GEII RFEK G     +K   + +  AE  Y +   + FF  L+ ++TSGPVV    EGE  V   R I+GATNP ++APGTIR D A     N  HGSDSV SA++EIA +F
Sbjct:    3 VERTLSIIKPDAVGKNHIGEIIARFEKAGLKPVAMKYKHLSQAEAEGFYAEHKERGFFADLVAFMTSGPVVVSALEGENAVLAHREILGATNPKEAAPGTIRADFATSIDENAAHGSDSVASAEREIAYFF 133          
BLAST of DN621246 vs. ExPASy Swiss-Prot
Match: NDK_YERPP (Nucleoside diphosphate kinase OS=Yersinia pestis (strain Pestoides F) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.058e-26
Identity = 56/131 (42.75%), Postives = 84/131 (64.12%), Query Frame = 3
Query:   45 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 437
            +E+TF +IKP+ V    +G I  RFE+ GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D +     N +HGSD+VESAQ+EIA +F
Sbjct:    3 LERTFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of DN621246 vs. ExPASy Swiss-Prot
Match: NDK_YERPN (Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.058e-26
Identity = 56/131 (42.75%), Postives = 84/131 (64.12%), Query Frame = 3
Query:   45 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 437
            +E+TF +IKP+ V    +G I  RFE+ GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D +     N +HGSD+VESAQ+EIA +F
Sbjct:    3 LERTFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of DN621246 vs. ExPASy Swiss-Prot
Match: NDK_YERPG (Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.058e-26
Identity = 56/131 (42.75%), Postives = 84/131 (64.12%), Query Frame = 3
Query:   45 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 437
            +E+TF +IKP+ V    +G I  RFE+ GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D +     N +HGSD+VESAQ+EIA +F
Sbjct:    3 LERTFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of DN621246 vs. ExPASy Swiss-Prot
Match: NDK_YERPE (Nucleoside diphosphate kinase OS=Yersinia pestis GN=ndk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.058e-26
Identity = 56/131 (42.75%), Postives = 84/131 (64.12%), Query Frame = 3
Query:   45 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 437
            +E+TF +IKP+ V    +G I  RFE+ GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D +     N +HGSD+VESAQ+EIA +F
Sbjct:    3 LERTFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of DN621246 vs. ExPASy Swiss-Prot
Match: NDK_YERPA (Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.058e-26
Identity = 56/131 (42.75%), Postives = 84/131 (64.12%), Query Frame = 3
Query:   45 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 437
            +E+TF +IKP+ V    +G I  RFE+ GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D +     N +HGSD+VESAQ+EIA +F
Sbjct:    3 LERTFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFF 133          
The following BLAST results are available for this feature:
BLAST of DN621246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK1_PARUW4.138e-2642.11Nucleoside diphosphate kinase 1 OS=Protochlamydia ... [more]
NDK_METCA5.404e-2642.75Nucleoside diphosphate kinase OS=Methylococcus cap... [more]
NDK_CHLFF5.404e-2645.04Nucleoside diphosphate kinase OS=Chlamydophila fel... [more]
NDK_CAMC15.404e-2643.51Nucleoside diphosphate kinase OS=Campylobacter con... [more]
NDK_ACIAD5.404e-2646.56Nucleoside diphosphate kinase OS=Acinetobacter sp.... [more]
NDK_YERPP7.058e-2642.75Nucleoside diphosphate kinase OS=Yersinia pestis (... [more]
NDK_YERPN7.058e-2642.75Nucleoside diphosphate kinase OS=Yersinia pestis b... [more]
NDK_YERPG7.058e-2642.75Nucleoside diphosphate kinase OS=Yersinia pestis b... [more]
NDK_YERPE7.058e-2642.75Nucleoside diphosphate kinase OS=Yersinia pestis G... [more]
NDK_YERPA7.058e-2642.75Nucleoside diphosphate kinase OS=Yersinia pestis b... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06H06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621246 ID=DN621246; Name=DN621246; organism=Citrus sinensis; type=EST; length=698bp
CACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAA
CAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGG
TGAAATCATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGA
AGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTG
TCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACCTCTGGTCC
TGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGACTGGCCGCA
CTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGT
GGTGATTTGGCTATCGTGACGGGCAGGAATATCATCCATGGAAGTGACTC
AGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTA
TTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTT
TGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCTATCCCTAT
CCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGTTATGAAGT
ATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGCTTTCATTCTT
GTGGTTGCCATATACAATATTTAAGCTTTTTTGTTGACTGTATTATGA
back to top