DN621237

Overview
NameDN621237
Unique NameDN621237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621237 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.425e-12
Identity = 55/171 (32.16%), Postives = 82/171 (47.95%), Query Frame = 1
Query:  106 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN----GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 594
            RA +AEF++T +F++    + M  +K +   A                          ISGGH+NPAVTFG F+   +SL R I Y + Q LG+     ++K        G    A  ++SG    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V
Sbjct:   55 RAGIAEFVATFLFLYITILTVMGVSKSSSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 222          
BLAST of DN621237 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 55/171 (32.16%), Postives = 81/171 (47.37%), Query Frame = 1
Query:  106 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN----GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 594
            RA +AEF++T +F++    + M  +K T   A                          ISGGH+NPAVTFG F+   +SL R + Y I Q LG+     ++K        G    A  ++ G    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V
Sbjct:   55 RAGIAEFVATFLFLYITILTVMGVSKSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 222          
BLAST of DN621237 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 49/173 (28.32%), Postives = 79/173 (45.66%), Query Frame = 1
Query:  103 LRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFA---LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIA-----PIAIGFIVG 597
            L+A  AEF++TLIFVF G  S + +        +                         +SGGH+NPA+T    VG  ISLLR + Y +AQL+G+     +L  +  G      A   L++      AVV E+++TF L   ++++    +   +G+ A      + +G +VG
Sbjct:   11 LKAVFAEFLATLIFVFFGLASALKW-------PSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPGNARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVG 176          
BLAST of DN621237 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 59/187 (31.55%), Postives = 87/187 (46.52%), Query Frame = 1
Query:   76 PREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK--------FVTNGQTTSA--FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 594
            P E +     RA +AEFI+T +F++    + M   +  +  A+                         ISGGH+NPAVTFG F+   +SL R + Y I Q LG+     ++K         +  G  T A  +   SG+GA      EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V
Sbjct:   43 PGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLGA------EIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 220          
BLAST of DN621237 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 52/173 (30.06%), Postives = 80/173 (46.24%), Query Frame = 1
Query:  103 LRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT--NGQTTSAF-ALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIA-----PIAIGFIVG 597
            L+A  AEF++TLIFVF G GS + +        +                         +SGGH+NPA+T    VG  ISLLR   Y  AQL+G+     +L  V   N +   A  AL++      A+V E+++TF L   ++A+    +   +G+ A      + +G +VG
Sbjct:   11 LKAVFAEFLATLIFVFFGLGSALKW-------PSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPALSIGLSVTLGHLVG 176          
BLAST of DN621237 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 55/172 (31.98%), Postives = 80/172 (46.51%), Query Frame = 1
Query:  106 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG-----QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKK----GSLGTIAPIAIGFIV 594
            RAA+AEF +TL+ V     + +   + +  G    +                      ISGGH+NPAVTF   +   +SL R  LY +AQ +G+     L + +  G         A  L++G  A   VV E+V TF LVYTV+ +A DPK+      +  +AP+ IG  V
Sbjct:   35 RAAIAEFTATLLLVCISVSTVIGEKRQSGEGG---AGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVF-SATDPKRKARDSHVPVLAPLPIGLAV 202          
BLAST of DN621237 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 48/172 (27.91%), Postives = 81/172 (47.09%), Query Frame = 1
Query:  106 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT--NGQTTSAF-ALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIA-----PIAIGFIVG 597
            +A  AEF++TLIFVF G GS + +        +                         +SGGH+NPA+T    +G  ISLLR + Y  AQL+G+     +L ++   N +   A  AL++      A+V E+++TF L   ++++    +   +G+ A      + +G +VG
Sbjct:   12 KAVFAEFLATLIFVFFGLGSALKW-------PSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGILYWLAPLNARGNLAVNALNNNTTPGKAMVVELILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVG 176          
The following BLAST results are available for this feature:
BLAST of DN621237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PIP11_ORYSJ3.425e-1232.16Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_MAIZE4.473e-1232.16Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
AQP5_PIG4.473e-1228.32Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
PIP14_ARATH5.842e-1231.55Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
AQP5_HUMAN9.965e-1230.06Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
PIP28_ORYSJ2.220e-1131.98Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
AQP5_RAT2.899e-1127.91Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06H01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621237 ID=DN621237; Name=DN621237; organism=Citrus sinensis; type=EST; length=607bp
GTAATCACACCCCAAAGGTTCAATCTTCATCGTTTGATCTCCATCATGCC
GATCAGAAACATTGCCGTTGGCCATCCCCGTGAGGCGACTCATCCAGATG
CCCTAAGGGCAGCCCTAGCAGAGTTCATCTCAACTCTAATATTTGTCTTT
GCCGGTGAAGGCTCGGGCATGGCCTTCAACAAGCTCACTCACAACGGCGC
CAACACCCCCTCCGGCCTCGTCGCCGCCTCTGTTGCTCACGCTTTCGCCC
TTTTCGTTGCTGTCGCCGTTGGCGCCAACATTTCCGGTGGCCACGTTAAT
CCTGCTGTCACCTTTGGCGCCTTCGTTGGAGGTAACATCTCCCTTCTACG
AGGCATCCTCTACTGGATCGCCCAGCTTCTTGGATCCACCGTCGCATGCT
TGCTTCTTAAGTTCGTTACCAACGGCCAGACCACATCTGCTTTTGCTCTC
TCATCTGGAGTTGGTGCATGGAACGCAGTCGTTTTCGAGATCGTGATGAC
ATTCGGACTAGTGTACACAGTGTATGCCACAGCCCTGGACCCAAAGAAGG
GAAGCTTGGGGACAATTGCACCAATTGCAATTGGTTTCATTGTAGGAGCC
AACATCT
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