DN621236

Overview
NameDN621236
Unique NameDN621236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23
Identity = 69/175 (39.43%), Postives = 96/175 (54.86%), Query Frame = -2
Query:  242 ANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK--------FVTNGQTTSA--FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVY 715
            A ISGGH+NPAVTFG F+   +SL R + Y + Q LG+     ++K         +  G  T A  +   SG+GA      EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     +WD+HWV+WVGP IG  LA + +
Sbjct:  106 AGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHGYTKGSGLGA------EIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYH 273          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.334e-22
Identity = 66/171 (38.60%), Postives = 94/171 (54.97%), Query Frame = -2
Query:  239 ANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQ-----TTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 715
            A ISGGH+NPAVTFG F+   +SL R I Y + Q+LG+     ++K     Q        A  ++ G    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A+V      W++HW++WVGP IG  LA + ++
Sbjct:  109 AGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQ 278          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 64/165 (38.79%), Postives = 86/165 (52.12%), Query Frame = -2
Query:  230 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT----NGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 712
            +ISG H+NPAVT    V  +IS +R  +Y  AQ  G      LL  VT     G   +A + S+ + AW     E ++TF LV   Y  + DP K  +G  A  +IG    A       +    +NPA S GP+ V   WD+HWVYW GPL+GG  +G+VYE+ F
Sbjct:  119 HISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTF-LVVLCYFVSTDPMKKFMGNSAA-SIGCAYSACCFVSMPY----LNPARSLGPSFVLNKWDSHWVYWFGPLVGGMASGLVYEYIF 277          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: AQPB_DICDI (Aquaporin B OS=Dictyostelium discoideum GN=wacA PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.973e-22
Identity = 63/168 (37.50%), Postives = 91/168 (54.17%), Query Frame = -2
Query:  233 ANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKF---VTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAL----DPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFF 715
            + ISG  +NPAVT G    G + +L GI + I Q +G+ V   ++K        +  SA  L++GV        E+V T  LV+ V   A+    DPK   +  +AP+AIG  V A +     F G S+NPA SFGPA+ S +W  H++YW GP+ GG +AG+ +  F
Sbjct:   85 SGISGCQLNPAVTVGCVTTGRMGILNGIAFIIFQCVGALVGAGMMKASLPTFYERDLSATTLATGVNVARGFFLEMVTTSFLVFVVLGVAVYNEWDPK---ISRVAPLAIGCAVIAGVGFLNLFTGGSLNPARSFGPAVFSDTWHRHYIYWFGPICGGIIAGLFWRIF 249          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.130e-21
Identity = 68/189 (35.98%), Postives = 97/189 (51.32%), Query Frame = -2
Query:  191 ANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG-----QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKK----GSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV-----SWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 715
            A ISGGH+NPAVTF   +   +SL R  LY +AQ +G+     L + +  G         A  L++G  A   VV E+V TF LVYTV+ +A DPK+      +  +AP+ IG  V    LA     G  +NPA S GPALV     + +W + W++WVGP  G   A I + +     + +   ++ Y
Sbjct:   88 AGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVF-SATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWVGPFAGAAAAMIYHHYILRGAAAKAFASSSY 275          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.287e-21
Identity = 62/170 (36.47%), Postives = 90/170 (52.94%), Query Frame = -2
Query:  239 ANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTS----AFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKK----GSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 715
            A +SGGH+NPAVTFG  +   +SL R + Y + Q LG+     ++K   +    S    A A+S G    + +  E+V TF LVYTV+ +A D K+      +  +AP+ IGF V    LA     G  +NPA S G A++      W  HW++WVGP  G  LA + ++
Sbjct:  114 AGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTKGDGLGAEVVGTFVLVYTVF-SATDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQ 282          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.607e-21
Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = -2
Query:  242 AVGANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVY 724
            AVG ++SG H+NPAVT G  V G     R   Y +AQ   +T A ++L+ +  G+     A   G     ++V E V+TF L++ + A A D +  ++G +A +A+G  +  N+L  G   GASMNPA S GPALV   +   WVY +GP  G       Y
Sbjct:  105 AVG-HVSGAHLNPAVTLGFAVAGRFPWRRAPAYALAQTAAATAASVVLRLMFGGRHAPVPATLPGGAHAQSLVIEFVITFYLMFVIMAVATDDQ--AVGHMAGVAVGGTIMLNVLFAGPVSGASMNPARSIGPALVGSKYTALWVYILGPFAGAAAGAWAY 262          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 60/159 (37.74%), Postives = 84/159 (52.83%), Query Frame = -2
Query:  236 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 712
            +ISG H NPAVT    V       +  LY  AQL GS +A L L+ + N    + F  +    +  A+V EI+++F L++ +   A D +  + G +A IA+G  +  N+   G   GASMNPA S GPA+V   +   WVY VGP +G    G VY F
Sbjct:   95 HISGAHFNPAVTVTFAVFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPKAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSR--ATGELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIFAGGFVYNF 251          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: NIP21_ORYSJ (Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 58/164 (35.37%), Postives = 91/164 (55.49%), Query Frame = -2
Query:  236 AVGANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGA-WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 724
            AVG +ISG H+NPAVT    V  +   ++   YW AQ  G+  A  +LK V +         ++ VG  W+++V E+++TF +++   A A D +  ++G +A +A+G  V    +  GA  G SMNPA + GPAL S  +D  W+Y++GP++G       Y F
Sbjct:   98 AVG-HISGAHMNPAVTLAFAVFRHFPWIQVPFYWAAQFTGAICASFVLKAVIH--PVDVIGTTTPVGPHWHSLVVEVIVTFNMMFVTLAVATDTR--AVGELAGLAVGSAVCITSIFAGAISGGSMNPARTLGPALASNKFDGLWIYFLGPVMGTLSGAWTYTF 256          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 63/167 (37.72%), Postives = 90/167 (53.89%), Query Frame = -2
Query:  239 GHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK------FVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKK----GSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 700
            GH+NPAVTFG F+   +SL R + Y I Q LG+     ++K      ++ NG   +  A   G    + +  EIV TF LVYTV+ +A D K+      +  +AP+ IGF V    LA     G  +NPA S G A++     +W +HW++WVGP IG  LA I ++
Sbjct:  112 GHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGRGVVKGFQQGLYMGNGGRRNVVA--PGYTKGDGLGAEIVGTFILVYTVF-SATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQ 275          
The following BLAST results are available for this feature:
BLAST of DN621236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
PIP12_ARATH7.823e-2339.43Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP2_PEA1.334e-2238.60Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
BIB_DROME1.743e-2238.79Neurogenic protein big brain OS=Drosophila melanog... [more]
AQPB_DICDI2.973e-2237.50Aquaporin B OS=Dictyostelium discoideum GN=wacA PE... [more]
PIP28_ORYSJ1.130e-2135.98Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP16_MAIZE3.287e-2136.47Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
NIP14_ORYSJ5.607e-2137.27Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]
NIP42_ARATH2.130e-2037.74Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
NIP21_ORYSJ2.130e-2035.37Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica G... [more]
PIP11_MAIZE8.096e-2037.72Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06H01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621236 ID=DN621236; Name=DN621236; organism=Citrus sinensis; type=EST; length=728bp
TAGAAAACAAAGCCATAGCCNTGGGACTCCATAATTATCGCGATACAATA
ATCCAGCAGCTCATGACGATGGAAACAGATCAACGGCCATAAATTAAACA
CAAATTAAAAATAAAAAGAAAGAACCTCGGTAAAAGCAAATTAAATACAA
CATCCGTGCAAACTCACATAGATGGCAAGCTTTTAGCTTAGTACTCGGTT
GTTGGGAGCTGCTCGTGAGACTGGTTAATGAAGAAGAACTCGTAGACGAT
GCCAGCTAGCCCACCACCGATGAGTGGCCCGACCCAGTAGACCCAGTGGT
TGTCCCAGCTCCAGCTTACCAAAGCTGGCCCGAATGACACTGCTGGGTTC
ATTGAAGCTCCATCAAACGCCCCGCCCGCCAAGATGTTGGCTCCTACAAT
GAAACCAATTGCAATTGGTGCAATTGTCCCCAAGCTTCCCTTCTTTGGGT
CCAGGGCTGTGGCATACACTGTGTACACTAGTCCGAATGTCATCACGATC
TCGAAAACGACTGCGTTCCATGCACCAACTCCAGATGAGAGAGCAAAAGC
AGATGTGGTCTGGCCGTTGGTAACGAACTTAAGAAGCAAGCATGCGACGG
TGGATCCAAGAAGCTGGGCGATCCAGTAGAGGATGCCTCGTAGAAGGGAG
ATGTTACCTCCAACGAAGGCGCCAAAGGTGACAGCAGGATTAACGTGGCC
ACCGGAAATGTTGGCGCCAACGGCGACA
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