DN621236

Overview
NameDN621236
Unique NameDN621236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: AQP9_RAT (Aquaporin-9 OS=Rattus norvegicus GN=Aqp9 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 55/197 (27.92%), Postives = 84/197 (42.64%), Query Frame = -2
Query:  206 ISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLL--------------KFVTNGQTTSAFALSS----GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGP----ALVSWSWDNH-------WVYWVGPLIGGGLAGIVYEFFFINQSHEQL 709
            ISGGH+NPAV+F     G +   +   Y  AQ LG+ V    +              K +  G+  +AF  ++     +    A V ++V T  L+  V+A       G    + P+ IG ++     + G   G +MNPA    P    AL  W ++         W+  VGP+IG  L G++Y   FI   H +L
Sbjct:   78 ISGGHINPAVSFAMCAFGRMEWFKFPFYVGAQFLGAFVGAATVFGIYYDGLMAFAGGKLLVVGENATAFIFATYPAPFISTPGAFVDQVVSTMFLLLIVFAMFDSRNLGVPRGLEPVVIGLLIIVLSCSLGLNSGCAMNPARDLSPRLFTALAGWGFEVFTVGNNFWWIPVVGPMIGAFLGGLIY-ILFIQMHHSKL 273          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: PDUF_SALTY (Propanediol diffusion facilitator OS=Salmonella typhimurium GN=pduF PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 56/199 (28.14%), Postives = 83/199 (41.71%), Query Frame = -2
Query:  233 VAVGANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG-------------------QTTSAFAL--SSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSW--SWDN-----------HWVYWVGPLIGGGLAGIVYEFF 727
            V + A ISGGH+NPAVT   ++       + + Y IAQ  G+    LL   + +                    Q  S F+   ++ +  W A + E+V+T  L+  + A   D      G +AP+ IG +V     + G   G +MNPA  FGP L +W   W N             V  V P+IG      +Y +F
Sbjct:   54 VYLTAGISGGHLNPAVTIALWLFACFPKQKVLPYIIAQFAGAFGGALLAYVLYSSLFTEFETAHHMVRGSVESLQLASIFSTYPAAALNVWQAALVEVVITSILMGMIMALTDDGNGIPKGPLAPLLIGILVAVIGASTGPLTGFAMNPARDFGPKLFTWLAGWGNMAMSGGREIPYFIVPIVAPVIGACAGAAIYRYF 252          
The following BLAST results are available for this feature:
BLAST of DN621236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
AQP9_RAT3.084e-1127.92Aquaporin-9 OS=Rattus norvegicus GN=Aqp9 PE=2 SV=1[more]
PDUF_SALTY5.260e-1128.14Propanediol diffusion facilitator OS=Salmonella ty... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06H01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621236 ID=DN621236; Name=DN621236; organism=Citrus sinensis; type=EST; length=728bp
TAGAAAACAAAGCCATAGCCNTGGGACTCCATAATTATCGCGATACAATA
ATCCAGCAGCTCATGACGATGGAAACAGATCAACGGCCATAAATTAAACA
CAAATTAAAAATAAAAAGAAAGAACCTCGGTAAAAGCAAATTAAATACAA
CATCCGTGCAAACTCACATAGATGGCAAGCTTTTAGCTTAGTACTCGGTT
GTTGGGAGCTGCTCGTGAGACTGGTTAATGAAGAAGAACTCGTAGACGAT
GCCAGCTAGCCCACCACCGATGAGTGGCCCGACCCAGTAGACCCAGTGGT
TGTCCCAGCTCCAGCTTACCAAAGCTGGCCCGAATGACACTGCTGGGTTC
ATTGAAGCTCCATCAAACGCCCCGCCCGCCAAGATGTTGGCTCCTACAAT
GAAACCAATTGCAATTGGTGCAATTGTCCCCAAGCTTCCCTTCTTTGGGT
CCAGGGCTGTGGCATACACTGTGTACACTAGTCCGAATGTCATCACGATC
TCGAAAACGACTGCGTTCCATGCACCAACTCCAGATGAGAGAGCAAAAGC
AGATGTGGTCTGGCCGTTGGTAACGAACTTAAGAAGCAAGCATGCGACGG
TGGATCCAAGAAGCTGGGCGATCCAGTAGAGGATGCCTCGTAGAAGGGAG
ATGTTACCTCCAACGAAGGCGCCAAAGGTGACAGCAGGATTAACGTGGCC
ACCGGAAATGTTGGCGCCAACGGCGACA
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