DN621182 | Citrus Genome Database

Overview


Name	DN621182
Unique Name	DN621182
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	700

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DN621182 vs. ExPASy Swiss-Prot
Match: CALM_ELEEL (Calmodulin OS=Electrophorus electricus GN=calm PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.437e-34
Identity = 69/142 (48.59%), Postives = 95/142 (66.90%), Query Frame = 2

Query:   74 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 499
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF++MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAKKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146

HSP 2 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 2

Query:   89 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 289
            ++EI+EAF +FD DG+G I A EL   M  LG ++T+E++++MI + D DG G ++ +EF  MMTAK
Sbjct:   83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

BLAST of DN621182 vs. ExPASy Swiss-Prot
Match: CALM_DANRE (Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 5.437e-34
Identity = 69/142 (48.59%), Postives = 95/142 (66.90%), Query Frame = 2

Query:   74 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 499
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF++MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146

HSP 2 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 2

Query:   89 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 289
            ++EI+EAF +FD DG+G I A EL   M  LG ++T+E++++MI + D DG G ++ +EF  MMTAK
Sbjct:   83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

BLAST of DN621182 vs. ExPASy Swiss-Prot
Match: CALM_CTEID (Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 5.437e-34
Identity = 69/142 (48.59%), Postives = 95/142 (66.90%), Query Frame = 2

Query:   74 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 499
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF++MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146

HSP 2 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 2

Query:   89 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 289
            ++EI+EAF +FD DG+G I A EL   M  LG ++T+E++++MI + D DG G ++ +EF  MMTAK
Sbjct:   83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

BLAST of DN621182 vs. ExPASy Swiss-Prot
Match: CALM_CHICK (Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.437e-34
Identity = 69/142 (48.59%), Postives = 95/142 (66.90%), Query Frame = 2

Query:   74 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 499
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF++MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146

HSP 2 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 2

Query:   89 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 289
            ++EI+EAF +FD DG+G I A EL   M  LG ++T+E++++MI + D DG G ++ +EF  MMTAK
Sbjct:   83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

BLAST of DN621182 vs. ExPASy Swiss-Prot
Match: CALM_BOVIN (Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.437e-34
Identity = 69/142 (48.59%), Postives = 95/142 (66.90%), Query Frame = 2

Query:   74 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 499
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF++MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146

HSP 2 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 2

Query:   89 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 289
            ++EI+EAF +FD DG+G I A EL   M  LG ++T+E++++MI + D DG G ++ +EF  MMTAK
Sbjct:   83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

BLAST of DN621182 vs. ExPASy Swiss-Prot
Match: CALM_ANAPL (Calmodulin OS=Anas platyrhynchos GN=CALM PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.437e-34
Identity = 69/142 (48.59%), Postives = 95/142 (66.90%), Query Frame = 2

Query:   74 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 499
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF++MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146

HSP 2 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 2

Query:   89 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 289
            ++EI+EAF +FD DG+G I A EL   M  LG ++T+E++++MI + D DG G ++ +EF  MMTAK
Sbjct:   83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

BLAST of DN621182 vs. ExPASy Swiss-Prot
Match: CALMB_HALRO (Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 5.437e-34
Identity = 70/142 (49.30%), Postives = 94/142 (66.20%), Query Frame = 2

Query:   74 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 499
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  MM  K+ E DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF+ MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146

HSP 2 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 2

Query:   89 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 289
            ++EI+EAF +FD DG+G I A EL   M  LG ++T+E++++MI + D DG G ++ +EF  MMT K
Sbjct:   83 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTCK 149

BLAST of DN621182 vs. ExPASy Swiss-Prot
Match: CALM_TETPY (Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4)

HSP 1 Score: 144.05 bits (362), Expect = 7.101e-34
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 2

Query:   74 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 499
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  +M  K+ + D++EEL++AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG +N +EF+RMM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMM 146

BLAST of DN621182 vs. ExPASy Swiss-Prot
Match: CALM_STYLE (Calmodulin OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.101e-34
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 2

Query:   74 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 499
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  +M  K+ + D++EEL++AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG +N +EF+RMM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELVEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGHINYEEFVRMM 146

BLAST of DN621182 vs. ExPASy Swiss-Prot
Match: CALM2_BRALA (Calmodulin-2 OS=Branchiostoma lanceolatum GN=CAM2 PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 7.101e-34
Identity = 70/142 (49.30%), Postives = 94/142 (66.20%), Query Frame = 2

Query:   74 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 499
            L++++  E KEAF LFD DG GTI  KEL   MR+LG   TE ++  MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EMV EAD D DG+VN +EF+ MM
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMVREADIDGDGQVNYEEFVEMM 146

HSP 2 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 30/67 (44.78%), Postives = 48/67 (71.64%), Query Frame = 2

Query:   89 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 289
            ++EI+EAF +FD DG+G I A EL   M  LG ++T+E++++M+ + D DG G ++ +EF  MMT+K
Sbjct:   83 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMVREADIDGDGQVNYEEFVEMMTSK 149

The following BLAST results are available for this feature:

BLAST of DN621182 vs. ExPASy Swiss-Prot

BLAST of DN621182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 357


Match Name	E-value	Identity	Description
CALM_ELEEL	5.437e-34	48.59	Calmodulin OS=Electrophorus electricus GN=calm PE=...	[more]
CALM_DANRE	5.437e-34	48.59	Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3	[more]
CALM_CTEID	5.437e-34	48.59	Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2...	[more]
CALM_CHICK	5.437e-34	48.59	Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2	[more]
CALM_BOVIN	5.437e-34	48.59	Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2	[more]
CALM_ANAPL	5.437e-34	48.59	Calmodulin OS=Anas platyrhynchos GN=CALM PE=2 SV=2	[more]
CALMB_HALRO	5.437e-34	49.30	Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3	[more]
CALM_TETPY	7.101e-34	47.89	Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4	[more]
CALM_STYLE	7.101e-34	47.89	Calmodulin OS=Stylonychia lemnae PE=3 SV=2	[more]
CALM2_BRALA	7.101e-34	49.30	Calmodulin-2 OS=Branchiostoma lanceolatum GN=CAM2 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS11_06F20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006F20, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN621182 ID=DN621182; Name=DN621182; organism=Citrus sinensis; type=EST; length=700bp
CAGGGCAAAGGCAATGGCTAGTCTTTATAAAGGGGTTTCTAGGAAAGATA
AAATCAGAGGACGTCATCATGGGCTATCACAACAGAAGAAGCAAGAGATT
AAGGAAGCATTTGAACTTTTTGACACCGATGGCTCAGGCACTATTGATGC
CAAAGAGCTGAATGTCGCTATGAGGGCCCTTGGTTTTGAGATGACCGAAG
AGCAAATCAATCAAATGATTGCAGATGTCGACAAGGATGGAAGTGGTGCC
ATTGATTTAGATGAATTTGAACATATGATGACGGCTAAGATTGGAGAAAG
GGATTCTAAGGAAGAGCTCATGAAAGCATTCCATATCATTGACCAAGATA
ACAATGGAAAGATATCAGCTGGAGATATTAAGCGTATTGCGAGGGAGCTG
GGTGTAAACTTCACTGACCGAGAGATTCATGAGATGGTAGAGGAAGCAGA
CAGAGATCATGATGGAGAAGTAAACGCTGATGAGTTTATCCGTATGATGA
AGAGGACCACATTCGGGTACTAGAGATCCATAAGGATGAAGAAGGGTTGT
TGATGCATGGTAGCTGTAGTATATACTTTGTGCCAAGTTGAAAGGAAAAT
AATCATGGATTGATAAGTGATGGTTCATTGTTTTGGCTAAATTTTATGCT
TGCAAATTTATTTAATATGTAGCTGTCTTTTGTTATTTAATTGATCTGTG