DN621174

Overview
NameDN621174
Unique NameDN621174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.615e-58
Identity = 107/168 (63.69%), Postives = 132/168 (78.57%), Query Frame = -3
Query:  184 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 669
            KGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQ  +EK  + G LK
Sbjct:  226 KGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.755e-58
Identity = 105/167 (62.87%), Postives = 128/167 (76.65%), Query Frame = -3
Query:  181 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES----HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLKA 669
            KG+ GV+ RWGV +LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKKIY++G+A  E      +  TEFD TEK I PMGGF HYG+V  ++L++KGC  GP+KR +TLR+S+  QT R ALE+I LKFIDTSSKFGHG  Q  ++K KY+G  K+
Sbjct:  227 KGFNGVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.047e-57
Identity = 102/167 (61.08%), Postives = 135/167 (80.84%), Query Frame = -3
Query:  175 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAS---QESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLKA*F 666
            G++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N KIY++GK++   +  ++  TEFD T+K I PMGGFP YG+VN+DY++++G  +GPKKR++TLR+SL+ QT R+A E+I LK+IDTSSK GHGRFQ T EK  + G+LK  F
Sbjct:  227 GFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.979e-57
Identity = 104/161 (64.60%), Postives = 127/161 (78.88%), Query Frame = -3
Query:  184 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 666
            G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y++GK   E+++A TEFDRT+K ITPMGGF HYG +N D++++KG   G +KRVVTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQ   EK  + G LK
Sbjct:  225 GFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKGDDEANAA-TEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 6.787e-57
Identity = 106/168 (63.10%), Postives = 131/168 (77.98%), Query Frame = -3
Query:  184 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 669
            KGY+GV +RW   +LPRKTHRGLRKVACIGA HPARV+F+VARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQ  +EK  + G LK
Sbjct:  226 KGYKGVTSRWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 6.787e-57
Identity = 103/168 (61.31%), Postives = 128/168 (76.19%), Query Frame = -3
Query:  184 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES------HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 669
            +G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKKIY++G+           ++A T +D T+K ITP+GGFPHYG VN D++++KGC  G KKRV+TLR+SLL   SR ALE I+LKFIDT+SKFGHGRFQ  QEK  + G  K
Sbjct:  226 RGIKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.368e-56
Identity = 104/161 (64.60%), Postives = 125/161 (77.64%), Query Frame = -3
Query:  184 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 666
            G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KIY++GK   E ++A T FDRT+K I PMGGF HYG+VN D++++KG   G KKRVVTLR+SL   TSR A+EE+ LK+IDT+SKFG GRFQ   EK  + G LK
Sbjct:  225 GFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGKGDDEGNAA-TNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 217.238 bits (552), Expect = 7.503e-56
Identity = 102/161 (63.35%), Postives = 124/161 (77.02%), Query Frame = -3
Query:  184 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 666
            G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N KIY++GK   E++ A T FDRT+K ITPMGGF HYG +  D++++KGC  G +KR+VTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQ   EK  + G LK
Sbjct:  225 GFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGA-TSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 7.503e-56
Identity = 101/168 (60.12%), Postives = 127/168 (75.60%), Query Frame = -3
Query:  184 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES------HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 669
            +G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKKI+++G+           ++A T +D T K ITP+GGFPHYG VN D++++KGC  G KKRV+TLR+SLL   SR A+E I+LKFIDT+SKFGHGRFQ  QEK  + G  K
Sbjct:  226 RGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.848e-54
Identity = 102/161 (63.35%), Postives = 121/161 (75.16%), Query Frame = -3
Query:  184 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 666
            G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNG+HHRT +N K+Y++G A  ES S  TEFDRT+K I PMGGF  YG V  D++L+KG   G KKR+VT+R+SL   TSR A E + LK+IDT+SKFG GRFQ   EK  + G LK
Sbjct:  225 GFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSAGDES-SGATEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRATENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
The following BLAST results are available for this feature:
BLAST of DN621174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_HUMAN1.615e-5863.6960S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_DICDI2.755e-5862.8760S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_CAEBR1.047e-5761.0860S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3_KLULA3.979e-5764.6060S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3_MACFA6.787e-5763.1060S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3L_BOVIN6.787e-5761.3160S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_CANGA3.368e-5664.6060S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]
RL3_YEAST7.503e-5663.3560S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3L_HUMAN7.503e-5660.1260S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3_DEBHA1.848e-5463.3560S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06F16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006F16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621174 ID=DN621174; Name=DN621174; organism=Citrus sinensis; type=EST; length=755bp
ATACCGGTAAGATGTATTAACGCGCAAAAAAGAAACCATGCACAAATGAA
GTTTCAAAGAACTGCCAGTGTAGCCATAGCCATATTAATTCAAAATAGAG
ACTAGAATGACCAACAATCTTAGATGTTCAAAACTACCCTGAAACCAAAG
GCAATCTCTTTTTCAACTTGGCCAAAATCAAGCCTTGAGCCTTCCATAGT
ACTTGGCCTTCTCCTGAGTTCTCTGGAACCGACCATGGCCGAACTTGGAG
GATGTGTCAATGAACTTGAGCTTAATCTCCTCCAATGCAAGCCTAGACGT
CTGCTTCAGTAGGGACTGCCTCAAGGTCACAACACGCTTCTTAGGTCCAA
CACAGCAGCCCTTGATCAGCAGGTAATCTTCATTGACTACACCATAGTGG
GGGAAGCCTCCCATTGGGGTGATATCCTTCTCCGTCCTGTCAAATTCAGT
CATGGCAGAATGAGACTCCTGGCTGGCCTTCCCAAGCTTGTAAATTTTCT
TGTTCATCTCTGTACGGTGATGGTAGCCGTTCTGCCCAGCTCTAGCAACA
GTAAAGGAGACCCTAGCCGGATGCCAGGCACCAATACAAGCAACCTTGCG
TAGACCACGGTGAGTCTTACGAGGGAGACGAGTAACACCCCAACGAGTAA
CAACACCCTCATATCCCTTAAACAAAAACAGAGTAAGCTCAGATCTTCAT
CATTGATCTTAATCACATCAGCACTTTCCCATTGGCTGATGCCTCAAGTT
ATAAA
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