DN621146

Overview
NameDN621146
Unique NameDN621146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.249e-25
Identity = 52/125 (41.60%), Postives = 79/125 (63.20%), Query Frame = -3
Query:  357 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSW 716
            SA P+ +++  W A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A +++  K++Y     E+  +SW
Sbjct:   25 SASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSW 149          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.249e-25
Identity = 52/127 (40.94%), Postives = 79/127 (62.20%), Query Frame = -3
Query:  351 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSWTQ 716
            SA P+ +++  W A I+GP D+P+  G F + + F   YP KPP V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L SI SLL DPN   P   E A++YK  +++Y     E+   SW +
Sbjct:   25 SASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSWNE 151          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.249e-25
Identity = 58/127 (45.67%), Postives = 80/127 (62.99%), Query Frame = -3
Query:  336 PVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DKAKYESTARSWTQKYAMG 707
            PV + DMFHW+A I GP ++PY GG +++ IH    YP  PP V F+TK+ HPNI+ +NG +C+DILK  WSPA ++    L+I SLL++ +   PL  + A + +T DK  Y S  R  T  YA G
Sbjct:   28 PVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKG 154          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.632e-25
Identity = 52/117 (44.44%), Postives = 78/117 (66.67%), Query Frame = -3
Query:  342 QATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 680
            +A I+G  ++PY  GVF + +H P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ +L  I  L+ +PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:   35 RAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.632e-25
Identity = 51/114 (44.74%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  375 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYE 716
            S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   25 SGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.632e-25
Identity = 51/114 (44.74%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  375 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYE 716
            S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   25 SGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.632e-25
Identity = 51/114 (44.74%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  375 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYE 716
            S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   25 SGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.632e-25
Identity = 51/114 (44.74%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  375 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYE 716
            S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   25 SGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.632e-25
Identity = 51/114 (44.74%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  375 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYE 716
            S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   25 SGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.131e-25
Identity = 51/114 (44.74%), Postives = 74/114 (64.91%), Query Frame = -3
Query:  375 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYE 716
            S  P   ++  W A I GP  +P+  G F ++I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   25 SGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
The following BLAST results are available for this feature:
BLAST of DN621146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UBC2_KLULA1.249e-2541.60Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_DEBHA1.249e-2540.94Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC16_SCHPO1.249e-2545.67Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UBE2T_BOVIN1.632e-2544.44Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBE2B_RAT1.632e-2544.74Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT1.632e-2544.74Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE1.632e-2544.74Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN1.632e-2544.74Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN1.632e-2544.74Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBE2A_MOUSE2.131e-2544.74Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06F01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621146 ID=DN621146; Name=DN621146; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTAAACACGGATAAAATTGCAATCTCATAAGCAGCTTAAAGCT
AGAGCAAACAGTAATTTAAACAGAACTGTTTGAGATACATGGTAAACAAA
TGCGTGCACCCAAGAACATTAAGTCATAAACCACTGATCTTACAAGATCA
ATGTCAACACAAGCAAGCTACAATACAACATCAATCTTGTTTTGATGGAA
GACAGTGCATGAACACCATCTTCAATTATCATTTCCAAAAGGCAAAAACA
AAGACGGAAGACGAGCATATCACACTTCATTTTATACATAAATATTATGT
GATGAAAGACTATGTCCTAGATGATTTCATACTTAGCCCATGGCATACTT
TTGGGTCCAGCTCCTAGCAGTTGATTCATACTTAGCCTTGTCTGTCTTGT
ACATGTGAGCTATTTCTGGCACCAAAGGGTCATCTGGGTTTGGGTCCGTC
AACAATGAACAAATTGAGAGCAATACCTTAGATATAGTGAGGGCAGGACT
CCACTGCTCTTTTAGTATGTCGAGACATATACTGCCATTGCTGTTAATAT
TTGGGTGAAAAACCTTGGTCCTAAACGCGACCTTAGGTGGTTTGAATGGA
TAATCAGGAGGGAAATGGATTGAAACTAGAAATACACCTCCTGCATAAGG
ACTATCTGGGGGGCCCATTATGGTTGCTTGCCAATGAAACATGTCTTCAG
CCACAGGACCAGCACTGC
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