DN621143

Overview
NameDN621143
Unique NameDN621143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL22_SULTO (50S ribosomal protein L22P OS=Sulfolobus tokodaii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 41/117 (35.04%), Postives = 65/117 (55.56%), Query Frame = -2
Query:  305 AIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 655
            AIR + L  AK++L +V+  K+A+PF +   G    +    +     GR+P K+ K++L +L+NAE+NA  KGLD++ + I HI  ++    +R   RA GR         HIE+ L
Sbjct:   37 AIRGMKLNDAKQFLNNVLEEKEALPFWKHSHGASHRSNISPKWKVKSGRYPKKAIKYVLKVLENAENNANSKGLDLENVKIVHIAAHKGIILKRYMPRAFGRSTRKYRYTSHIEVIL 153          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL22_NITMS (50S ribosomal protein L22P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = -2
Query:  311 KNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 679
            K+ RE A AI+ L + KA+ YL+ V+   +A+ F R+   VG  A          GR+P K+A+  + +L N ESNAE KG+D+D L I +  V++    +R   RA GR  P  +   H+EL
Sbjct:   29 KHAREVAVAIKGLSIEKARDYLQAVVNKDRAVAFRRYKNQVGHKADPGMM----SGRYPQKTAREFIKVLDNLESNAEYKGMDLDRLKIVNATVHKGVIVKRFIPRAMGRATPKNNVLTHVEL 147          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL22_HALMA (50S ribosomal protein L22P OS=Haloarcula marismortui GN=rpl22p PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = -2
Query:  305 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 712
            KA   + ++ FK+++  A  I+     +A  YLE V+   Q +PF +   GVG  ++         GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  ++  +Q+ R  RA GR + + S    +EL L
Sbjct:   16 KAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDA---GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELIL 148          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL22_SULSO (50S ribosomal protein L22P OS=Sulfolobus solfataricus GN=rpl22p PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 46/136 (33.82%), Postives = 69/136 (50.74%), Query Frame = -2
Query:  305 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 712
            KA   D+    ++      AIR + L  AK +L  V+  K+A+PF R+  G    +    +     GR+P K+ + +L +L+NAE+NA  KGLDVD L I HI  ++    +R   RA GR         +IE+ L
Sbjct:   18 KAVIRDVPESIRDLYNVCKAIRGMYLNDAKDFLNRVLEEKEALPFWRYNKGASHKSNISAKWKIKAGRYPKKAIRQVLKVLENAEANATNKGLDVDKLIIRHIAAHKGITLQRYMPRAFGRATAKYRRTSNIEVIL 153          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL22_METB6 (50S ribosomal protein L22P OS=Methanoregula boonei (strain 6A8) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = -2
Query:  305 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 712
            + + ++L +  K++ E A  IR   +  A  YL DV+A K+AIPF  F     R    K   P     GR+PVK++K  + +L++ + NAE  GLD + L I H   N+ + Q+    RA GR +P +    +IE+ +
Sbjct:   17 RGKANELSISPKHSIEIADFIRHQRVNDALAYLADVVALKKAIPFRHF----NRNVAHKRGLPGNWDAGRYPVKASKAYIRILESIKKNAEYTGLDTENLEIIHASANRGRAQKAYFPRAMGRASPKVRETVNIEIVV 150          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL22_PICTO (50S ribosomal protein L22P OS=Picrophilus torridus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 41/136 (30.15%), Postives = 75/136 (55.15%), Query Frame = -2
Query:  305 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 712
            +AR  ++ +  K+    AH ++ + L  AK  L++V+  K  +P+ R+   V       +R   G GR+PVK+A+    LL++  +NAE KGL  D+L I HI V++ +  ++ T +A+GR   +     ++E+ +
Sbjct:   15 RARIREIDISLKDAVNVAHFLKGMDLDSAKNVLDNVIEKKVPVPYFRYMDSVS------HRKGIGPGRYPVKAARAFKKLLEDVSANAEFKGLS-DSLEIVHIAVSKGRMIKKYTPKAYGRAGAFFKDLVNLEVVV 143          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL22_METS5 (50S ribosomal protein L22P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 40/126 (31.75%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  311 VHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 688
            V  K+      AIR + + +A+ +L+ VM  K+A+P+ R+  G    +    +     GR+P K+ K++   L+NA +NA+ KGLD D L + HI  ++    +R   RA GR     +   HIE+
Sbjct:   26 VSIKDLYNVCKAIRGMNVKEAQAFLQRVMEEKEALPYWRYDHGASHKSNISRKWKVKSGRYPKKAIKYVNKALENALANAQGKGLDEDKLKVVHIAAHKGIIIKRFMPRAFGRATKKYNRTSHIEV 151          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL22_CENSY (50S ribosomal protein L22P OS=Cenarchaeum symbiosum GN=rpl22p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = -2
Query:  311 RVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 691
            ++  K+ RE +  IR + + KA+ +L+ V+  K+A+PF RF   VG  +          GR+P KSA   + LL N ESNAE KG+D+D L I     ++    +R   RA GR  P  +   H+EL
Sbjct:   25 QISHKHAREISLHIRGMTVEKARDFLQAVIEKKRAVPFRRFKRQVGHRSDPGVM----AGRYPEKSAAEFIKLLDNLESNAEYKGMDLDRLTIVGAVAHKGILIKRFIPRAMGRSTPKNNVLTHVEL 147          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL22_THENV (50S ribosomal protein L22P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 43/134 (32.09%), Postives = 68/134 (50.75%), Query Frame = -2
Query:  311 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 712
            KA   + ++ +K + E A  I  + L +AK +LEDV+  K+ IP   F       A   +  P    +WPVK A+  LDLL+N E+NA  +GLDV+ + I H   ++  +      RA GR   +     ++E+
Sbjct:   33 KAYAPEQKMSWKKSVEVARFIEGMTLRQAKSWLEDVVKMKRPIPIRTFKKKQAHHATPWSGWP--VAKWPVKVARRFLDLLENLENNARFRGLDVERVVIVHAAAHKGYRIHNIMPRAFGRATRFDEQTVNVEV 164          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL22_PYRIL (50S ribosomal protein L22P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl22p PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 43/134 (32.09%), Postives = 70/134 (52.24%), Query Frame = -2
Query:  311 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 712
            +A   + ++ +K + E A  I+ + L +AK +LEDV+  K+ IP   F       A   +  P    +WPVK AK  LDLL+N E+NA+ +GLDV+ + I H   ++  +      RA GR   +     ++E+
Sbjct:   33 RAYAPEQKMSWKKSVEVARFIKGMTLRQAKSWLEDVVKMKRPIPIKTFKKKQAHHAVPWSGWP--VAKWPVKVAKRFLDLLENLENNAKFRGLDVERVVIVHAAAHKGYRIPNIMPRAFGRATRFDEQTVNVEV 164          
The following BLAST results are available for this feature:
BLAST of DN621143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL22_SULTO7.110e-1335.0450S ribosomal protein L22P OS=Sulfolobus tokodaii ... [more]
RL22_NITMS1.213e-1237.4050S ribosomal protein L22P OS=Nitrosopumilus marit... [more]
RL22_HALMA1.213e-1233.0950S ribosomal protein L22P OS=Haloarcula marismort... [more]
RL22_SULSO1.584e-1233.8250S ribosomal protein L22P OS=Sulfolobus solfatari... [more]
RL22_METB62.069e-1233.3350S ribosomal protein L22P OS=Methanoregula boonei... [more]
RL22_PICTO7.861e-1230.1550S ribosomal protein L22P OS=Picrophilus torridus... [more]
RL22_METS51.027e-1131.7550S ribosomal protein L22P OS=Metallosphaera sedul... [more]
RL22_CENSY1.027e-1136.2250S ribosomal protein L22P OS=Cenarchaeum symbiosu... [more]
RL22_THENV2.987e-1132.0950S ribosomal protein L22P OS=Thermoproteus neutro... [more]
RL22_PYRIL2.987e-1132.0950S ribosomal protein L22P OS=Pyrobaculum islandic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06E24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006E24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621143 ID=DN621143; Name=DN621143; organism=Citrus sinensis; type=EST; length=716bp
TTTTTTTTTTTTTTTTTAAGCTTGAAAAGTCTTTAATTTTCATAAAGCTC
CAACAGTATGACTGAGGATTCTAACAAAACAGTAAACTGGACGTAATATG
AAATAAACAAAATATGATGTCTGATTTGACTAAATAACATCTCAGTCACT
ATTAAAGGTAAAAAAACTCACTTCATCAAGAACACAAAATAGAAAATCAG
GGCACTCTCCAATTGCTATGCTAAACCTCAGACAATTACTTCTTTGATTT
GCTAGTTGCCAACTGGGTCTCAGGCTCTTTCTTTACTGGCTCTTCCTTTT
CAGATAAGGTCAACTCAATATGGCAGGGAGAGGACATGTAAGGATTAATT
CTTCCATGAGCACGGTATGTGCGGCGCCTTTGCTTTTGTGCCTGGTTGAC
TTGGATGTGAGAAATGTAGAGTGCATCAACATCTAAACCTTTCACCTCAG
CATTACTCTCAGCATTCTTGAGCAAGTCAAGAATGAACTTTGCTGATTTG
ACAGGCCATCGTCCCTGTCCATTTGGATGCCTATTCTTTGCCTGAGCAGT
ACGTCCAACACCACCGCAGAATCGTGTGAAGGGAATGGCCTGTTTATGGG
CCATAACATCCTCCAAATACCTCTTAGCCTTCGTCAAAGGCAATTTCCTG
ATGGCATGGGCAGTTTCTCTCGTGTTCTTAAAATGAACCCTGAGATCAGA
GCCCCTGGCTTTGCAG
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