DN621056

Overview
NameDN621056
Unique NameDN621056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.065e-51
Identity = 96/152 (63.16%), Postives = 117/152 (76.97%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERARE 496
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA++AR+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARK 152          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.178e-50
Identity = 95/152 (62.50%), Postives = 116/152 (76.32%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERARE 496
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y++ KGNVFKNKR+LME IHK KA+RAR+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARK 152          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 3.427e-50
Identity = 93/152 (61.18%), Postives = 116/152 (76.32%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERARE 496
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRE+KKID+HMYH +Y++ KGNVFKNKR+LME IHK KA++AR+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARK 152          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 5.846e-50
Identity = 94/152 (61.84%), Postives = 115/152 (75.66%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERARE 496
            MVSLKLQKRL+AS+LKCG+G+VW+DPNE+ +++MANSR N+R+L+  GFI+RKP  +HSRSRAR    AKR GRH G G R GTREARLP+KI              KYRE+KKIDKH Y ++Y+K KGNVFKNKR L+E I KSK E+ RE
Sbjct:    1 MVSLKLQKRLAASILKCGKGRVWIDPNEIADVAMANSRDNVRRLIATGFIMRKPVVVHSRSRAREHNAAKRLGRHRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKYREAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLRE 152          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19B_SCHPO (60S ribosomal protein L19-B OS=Schizosaccharomyces pombe GN=rpl19b PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 4.190e-48
Identity = 91/151 (60.26%), Postives = 113/151 (74.83%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERAR 493
            M +L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQNIRKLVKDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ +              KYRES KIDKH+YH +Y++ KGN FK+KR L+E I ++KAE  R
Sbjct:    1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANR 151          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19A_SCHPO (60S ribosomal protein L19-A OS=Schizosaccharomyces pombe GN=rpl19a PE=1 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 7.147e-48
Identity = 89/151 (58.94%), Postives = 113/151 (74.83%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERAR 493
            M +L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQN+RKL+KDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ +              KYRES KIDKH+YH +Y++ KGN FK+KR L+E I ++KAE  R
Sbjct:    1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANR 151          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19_CAEEL (60S ribosomal protein L19 OS=Caenorhabditis elegans GN=rpl-19 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.032e-46
Identity = 87/151 (57.62%), Postives = 114/151 (75.50%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERAR 493
            M +L+LQKRL+++VLKCG+ +VWLDPNEV+EIS ANSRQ+IR+LV DG IIRKP  +HSR RAR  +EA+RKGRH+GYGKR+GT  AR+P K               +YR++KK+DKH+YH++Y++ KGN FKNK+ L+E I K K E  R
Sbjct:    1 MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKR 151          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19_YEAST (60S ribosomal protein L19 OS=Saccharomyces cerevisiae GN=RPL19A PE=1 SV=5)

HSP 1 Score: 171.785 bits (434), Expect = 1.542e-42
Identity = 83/152 (54.61%), Postives = 111/152 (73.03%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERARE 496
            M +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+SR R   ++KR+GRHSGYGKRKGTREARLP+++              KYR++ KIDKH+YH +Y + KGN FK+KR L+E I ++KA+  RE
Sbjct:    1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQRE 152          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19_PYRHO (50S ribosomal protein L19e OS=Pyrococcus horikoshii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.073e-27
Identity = 60/138 (43.48%), Postives = 88/138 (63.77%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVL 454
            M +LK+Q+R++A +LKCG  +VW+DP +V+E++ A +R++IR+L+K+G I +KP +  SR RAR   E K+KGRH G G RKG + AR+  K               K +E KKID+  Y  +Y++ KG  FKNK  L
Sbjct:    1 MNTLKMQRRIAAELLKCGENRVWIDPEKVDEVASAITREDIRRLIKEGVIRKKPIEGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRRELRKLKEQKKIDRKTYRMLYIRAKGGQFKNKHQL 138          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19_PYRAB (50S ribosomal protein L19e OS=Pyrococcus abyssi GN=rpl19e PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.122e-27
Identity = 58/138 (42.03%), Postives = 87/138 (63.04%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVL 454
            M +LK+Q+R++A +LKCG  ++W+DP  V++++ A +R++IR+L+K+G I +KP K  SR RAR   E K+KGRH G G RKG + AR+  K               K +E KKID+  Y  +Y++ KG  FK+K  L
Sbjct:    1 MKTLKMQRRVAAELLKCGENRIWIDPERVDDVASAITREDIRRLIKEGVIKKKPVKGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKEQKKIDRRTYRMLYIRAKGGQFKSKHQL 138          
The following BLAST results are available for this feature:
BLAST of DN621056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL19_BOVIN1.065e-5163.1660S ribosomal protein L19 OS=Bos taurus GN=RPL19 P... [more]
RL19_ICTPU1.178e-5062.5060S ribosomal protein L19 OS=Ictalurus punctatus G... [more]
RL19_DANRE3.427e-5061.1860S ribosomal protein L19 OS=Danio rerio GN=rpl19 ... [more]
RL19_DICDI5.846e-5061.8460S ribosomal protein L19 OS=Dictyostelium discoid... [more]
RL19B_SCHPO4.190e-4860.2660S ribosomal protein L19-B OS=Schizosaccharomyces... [more]
RL19A_SCHPO7.147e-4858.9460S ribosomal protein L19-A OS=Schizosaccharomyces... [more]
RL19_CAEEL1.032e-4657.6260S ribosomal protein L19 OS=Caenorhabditis elegan... [more]
RL19_YEAST1.542e-4254.6160S ribosomal protein L19 OS=Saccharomyces cerevis... [more]
RL19_PYRHO1.073e-2743.4850S ribosomal protein L19e OS=Pyrococcus horikoshi... [more]
RL19_PYRAB3.122e-2742.0350S ribosomal protein L19e OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06C24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621056 ID=DN621056; Name=DN621056; organism=Citrus sinensis; type=EST; length=498bp
CTGATCGCGAGAGACAGAGGGGGAGAGAAGAGAAGGGAAAATGGTGTCGT
TGAAGTTACAGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGGC
AAGGTCTGGCTTGACCCTAATGAGGTCAACGAAATCTCCATGGCCAACTC
CAGGCAGAACATTAGGAAATTGGTGAAGGATGGTTTCATCATCAGGAAGC
CAACAAAGATCCACTCCCGTTCTCGCGCTCGCAGAATGAAGGAAGCCAAG
AGGAAGGGCCGTCACTCTGGATATGGTAAGAGAAAGGGTACTAGGGAGGC
GAGGCTTCCCACCAAAATCCTCTGGATGAGAAGGATGCGTGTGCTCAGGC
GGTTGCTCCGCAAATACCGTGAGTCGAAGAAAATTGACAAGCACATGTAC
CATGACATGTACATGAAGGTCAAGGGTAATGTATTTAAGAACAAGCGTGT
CCTCATGGAGAGTATCCACAAGTCAAAGGCTGAAAGGGCAAGAGAGAA
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