FC922054

Overview
NameFC922054
Unique NameFC922054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ERPA_KLEP3 (Iron--sulfur cluster insertion protein erpA OS=Klebsiella pneumoniae (strain 342) GN=erpA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.630e-15
Identity = 37/101 (36.63%), Postives = 61/101 (60.40%), Query Frame = 3
Query:  138 TDSAASRVRHLLQQRQRPYLKLGV--KARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            T++AA++V+HL+     P LKL V     GC+G  Y   + D+  + D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   12 TEAAANKVKHLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: YUTM_BACSU (Uncharacterized protein yutM OS=Bacillus subtilis GN=yutM PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 36/106 (33.96%), Postives = 66/106 (62.26%), Query Frame = 3
Query:  129 VTLTDSAASRVRHLLQQRQRP--YLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 440
            VT+T++AA  ++ ++++ +    +L++GVK  GC+GLSY + +  E+++ D + +  G+ +L+D ++L  + GT +D+    L   F   NPN+   CGCG SF T
Sbjct:    5 VTITEAAALHIKDMMKEHEEENAFLRVGVKGGGCSGLSYGMGFEHEKSESDSVFDQHGITVLVDKESLDIMNGTVIDYKQSMLGGGFTIDNPNAIASCGCGSSFRT 110          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: YNIU_AZOVI (Uncharacterized protein in nifU 5'region OS=Azotobacter vinelandii PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = 3
Query:  129 VTLTDSAASRVRHLLQQRQRPY--LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            +TLT+SA S V   +    +P   L++ V+  GC+GL Y+L   +  A+ D+LV+  G+ +LID  +   + G  MDFV+    S F F+NPN+   CGCG+SF
Sbjct:    2 ITLTESAKSAVTRFISSTGKPIAGLRIRVEGGGCSGLKYSLKLEEAGAEDDQLVDCDGITLLIDSASAPLLDGVTMDFVESMEGSGFTFVNPNATNSCGCGKSF 105          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: HESB_PLEBO (Protein hesB OS=Plectonema boryanum GN=hesB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  129 VTLTDSAASRVRHLLQQRQRPY----LKLGVKARGCNGLSYTLNYADERAKFDELVEDKG-VKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            VTLT+ A  R+R  LQ    P     +++GV   GC+G  YTL+ A+E  K D+++E +G VKI IDP+A   + G  +DFV+  + S F F NPN+   CGCG+SF
Sbjct:    3 VTLTERAELRLRAFLQGTANPTDTKGIRVGVSDGGCSGYQYTLDIANE-PKPDDVIEQQGRVKIYIDPQAAALINGVVVDFVEGLMDSGFKFSNPNATDTCGCGQSF 108          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ERPA_SHEDO (Iron-sulfur cluster insertion protein erpA OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=erpA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 38/104 (36.54%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  129 VTLTDSAASRVRHLLQQRQRPYLKLGVKARG--CNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            +  TD+AA +V+ LL++ Q P LKL V   G  C+G  Y   + ++ +  D ++E +GVK+++DP +L +++G ++D+      S F   NPN+   CGCG SF
Sbjct:   11 IKFTDAAAIKVKGLLEEEQNPELKLRVYVTGGGCSGFQYGFTFDEKSSADDFVIEKQGVKLVVDPMSLQYLVGGEVDYTSGLEGSRFFVKNPNASSTCGCGASF 114          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ERPA_RUTMC (Iron-sulfur cluster insertion protein erpA OS=Ruthia magnifica subsp. Calyptogena magnifica GN=erpA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 35/110 (31.82%), Postives = 68/110 (61.82%), Query Frame = 3
Query:  111 AVRRQAVTLTDSAASRVRHLLQQRQRP--YLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            A+ +  +  +D+AA +V  L+++ +    +L++ +   GC+G SY  N+ +   + D  VE+ GV++++DP +  ++IG  +D+++D   + F+  NPN+K  CGCG SF
Sbjct:    6 ALEKADIIFSDNAAKKVSTLIEEEKNENLHLRVYITGGGCSGFSYGFNFDETYKEGDSSVENNGVQLVVDPMSYQYLIGATVDYLEDLQGARFIIHNPNAKTTCGCGSSF 115          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ERPA_ERWT9 (Iron--sulfur cluster insertion protein erpA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=erpA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 3
Query:  138 TDSAASRVRHLLQQRQRPYLKLGV--KARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            TD+AAS+V++L+     P LKL V     GC+G  Y   + D+  + D  +E  GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   12 TDAAASKVKNLISDENNPDLKLRVYITGGGCSGFQYGFTFDDKVNEGDMTIEKSGVALVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKTTCGCGSSF 112          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ERPA_DECAR (Putative iron-sulfur cluster insertion protein erpA OS=Dechloromonas aromatica (strain RCB) GN=erpA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15
Identity = 42/112 (37.50%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  111 AVRRQAV--TLTDSAASRVRHLLQQRQRPYLKLGV--KARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            AV   AV    TD+AA +V+ L+++   P LKL V     GC+G  Y   + +E  + D  +E  GV +LIDP +  +++G ++D+ +    S+FV  NPN+   CGCG SF
Sbjct:    3 AVNEMAVPFVFTDNAAGKVKELIEEEGNPGLKLRVFVTGGGCSGFQYGFTFDEEVNEDDTTMEKNGVTLLIDPMSYQYLVGAEIDYTEGLEGSQFVIRNPNATSTCGCGSSF 114          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ERPA_BORPD (Putative iron--sulfur cluster insertion protein erpA OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=erpA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  138 TDSAASRVRHLLQQRQRPYLKLGV--KARGCNGLSYTLNYADERAKFDELVEDK-GVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            TDSAA++V+ LL +   P LKL V  +  GC+G  Y   + DE    D+ V DK GV++L+DP +  +++G ++D+ +D   ++FV  NPN+   CGCG SF
Sbjct:   20 TDSAAAKVKDLLAEEGNPELKLRVFVQGGGCSGFQYGFTF-DEAVNEDDTVLDKNGVQLLVDPMSFQYLVGAEIDYKEDLEGAQFVIRNPNASTTCGCGSSF 120          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ERPA_AZOSB (Putative iron-sulfur cluster insertion protein erpA OS=Azoarcus sp. (strain BH72) GN=erpA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15
Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 3
Query:  123 QAVTLTDSAASRVRHLLQQRQRPYLKLGV--KARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            + +  TD+AA++VR L+ +   P LKL V     GC+G  Y   + +E  + D   E  GV +LIDP +  +++G ++D+ +    S+FV  NPN+   CGCG SF
Sbjct:    9 EILVFTDNAANKVRELIDEEGNPALKLRVFVTGGGCSGFQYGFTFDEEVNEDDTAFEKNGVTLLIDPMSYQYLVGAEIDYTEGLEGSQFVIRNPNATSTCGCGSSF 114          
The following BLAST results are available for this feature:
BLAST of FC922054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
ERPA_KLEP33.630e-1536.63Iron--sulfur cluster insertion protein erpA OS=Kle... [more]
YUTM_BACSU4.741e-1533.96Uncharacterized protein yutM OS=Bacillus subtilis ... [more]
YNIU_AZOVI4.741e-1539.42Uncharacterized protein in nifU 5'region OS=Azotob... [more]
HESB_PLEBO4.741e-1543.93Protein hesB OS=Plectonema boryanum GN=hesB PE=3 S... [more]
ERPA_SHEDO4.741e-1536.54Iron-sulfur cluster insertion protein erpA OS=Shew... [more]
ERPA_RUTMC6.192e-1531.82Iron-sulfur cluster insertion protein erpA OS=Ruth... [more]
ERPA_ERWT96.192e-1537.62Iron--sulfur cluster insertion protein erpA OS=Erw... [more]
ERPA_DECAR8.087e-1537.50Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BORPD8.087e-1541.18Putative iron--sulfur cluster insertion protein er... [more]
ERPA_AZOSB8.087e-1536.79Putative iron-sulfur cluster insertion protein erp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1DA06RM1 SLH Citrus sinensis cDNA clone KN0AAM1DA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922054 ID=FC922054; Name=FC922054; organism=Citrus sinensis; type=EST; length=740bp
AATTTTCTTTTTTTGAAAAAAAAGGAAATTAAATAGAAAAAGATTGCGTG
ACATTTTGGATATGATCGATGGCTTCGTTTCTGGCGCAAGCCGCTGAGAA
AATCGGACCGGCCGTTAGGCGGCAGGCCGTGACGTTAACAGACTCCGCCG
CATCTAGAGTACGTCACCTCCTCCAGCAACGCCAGCGACCTTACCTCAAG
CTCGGCGTCAAGGCCCGTGGCTGCAACGGCTTGTCCTACACCCTCAATTA
CGCCGATGAGAGAGCTAAGTTTGATGAGTTGGTTGAGGATAAGGGTGTGA
AGATACTGATTGATCCAAAAGCTCTCATGCACGTTATTGGGACCAAAATG
GATTTTGTAGATGATAAGCTCAGGTCTGAGTTTGTATTCATTAATCCAAA
CTCTAAAGGGCAGTGTGGTTGTGGTGAATCCTTTATGACAACCAGCAGTA
GTGGAGCGTCTAAGCAGGGTGGAAGCTAGGGATTCTTACAAACTAATAGT
ACATGAAGAATGAACGTAGATGATTCTTTTCCCTGGCTGGCCAAGCATTA
CGCACTTGTCTGAAGGTTGTGAATGAAAGGTAGACATCCTCGGTGAGCTT
TAATGGCAGTTGGAGCAACAGGGGCTTTACTAATTCACGTCCTGGGAATC
ATTGCTGTTTTGCCGTCTACAAACAAATTTGTAAAACTATTGTAGCATTT
TTTTTCCTGGTTTTGACAAAAATACCTTTGTAACCTGATT
back to top