DN621045

Overview
NameDN621045
Unique NameDN621045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_VIBCH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio cholerae GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = -1
Query:  408 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN-----KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRER 827
            P II  V   L A    + + AV      + F+PN VK + D  GYA+YFSR  IP++     K+ K   Q P L H+GI +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V + ++    GVD PED+E +   + ER
Sbjct:  106 PAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQ-PLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_VIBC3 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = -1
Query:  408 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN-----KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRER 827
            P II  V   L A    + + AV      + F+PN VK + D  GYA+YFSR  IP++     K+ K   Q P L H+GI +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V + ++    GVD PED+E +   + ER
Sbjct:  106 PAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQ-PLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_POLNA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Polaromonas naphthalenivorans (strain CJ2) GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 54/141 (38.30%), Postives = 77/141 (54.61%), Query Frame = -1
Query:  429 PEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPY------LLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKI 827
            P +ID V + L+A PD   STA  S+    D  +PN VK V+D    A+YFSR  IP  +       + +      L H+GI +Y   FL+ +P L   PL+  E LEQL+ L +GY++ V   +H    GVD PED+E++
Sbjct:  106 PALIDAVARQLEARPDCAMSTAAHSIDELADFLNPNVVKVVLDARQTALYFSRAPIPAARDLAGQAWWKHGNLPKPLRHVGIYAYRVGFLRQFPQLPQAPLEQLESLEQLRALWHGYRIAVHITEHAPGPGVDTPEDLERV 246          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_PHOLL (3-deoxy-manno-octulosonate cytidylyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 54/143 (37.76%), Postives = 77/143 (53.85%), Query Frame = -1
Query:  411 EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP----YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRE 824
            EII  V + L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+ +   +  +      +L H+GI +Y + F++ Y    P+PL+  E LEQL+VL  G K+ V I +     GVD PED+  I     E
Sbjct:  106 EIIKQVAENLAGCKAGMATLAVQIHDAEEAFNPNAVKVVMDKQGYALYFSRATIPWERGRFIQSRETIGDNFLRHIGIYAYRAGFIRRYVQWEPSPLEQIEMLEQLRVLWYGEKIHVGIALKAPGVGVDTPEDLAAIRKVFTE 248          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_HAEIN (3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus influenzae GN=kdsB PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 55/146 (37.67%), Postives = 78/146 (53.42%), Query Frame = -1
Query:  417 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS--------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFM 827
            P I+  V   L      + S AV     E+ F+PN VK + D  GY +YFSR +IPY++          KV     YL H+GI +Y + F+K Y    PT L+  E LEQL+VL NG ++ V +  +  A GVD  ED+EK+ + +
Sbjct:  106 PVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAIL 251          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_HAEI8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus influenzae (strain 86-028NP) GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = -1
Query:  417 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ--------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFM 827
            P I+  V   L      + S AV     E+ F+PN VK + D  GY +YFSR +IPY++   +N Q          YL H+GI +Y + F+K Y    PT L+  E LEQL+VL NG ++ V +  +  A GVD  ED+EK+ + +
Sbjct:  106 PVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLADAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAIL 251          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_CHLFF (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila felis (strain Fe/C-56) GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 46/136 (33.82%), Postives = 78/136 (57.35%), Query Frame = -1
Query:  417 IIDGVVKALQAAPDA-VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 821
            ++D +V+ L+ +P+  V + A  +    +     +VKCV D +G A+YFSR  IP+     +  + P  LH+G+ ++  N L  Y    PT L   EDLEQL++LE+G  + +  V+ ++  VD PED+ K+E ++
Sbjct:  115 VVDTLVRKLEESPEIQVVTPAAKTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPHI----LKKETPIYLHIGVYAFRRNALFSYIESTPTSLSQAEDLEQLRILEHGGSIHICVVEAKSPSVDYPEDINKVEKYL 246          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_CHLAB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila abortus GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 48/136 (35.29%), Postives = 76/136 (55.88%), Query Frame = -1
Query:  417 IIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 821
            ++D +V+ L+  P+    T V           N +VKCV D +G A+YFSR  IP+     +  + P  LH+G+ ++  + L  Y    P+PL   EDLEQL+VLE+G  + V  V+ ++  VD PED+ K+E ++
Sbjct:  115 VVDALVRKLEEHPEIQMVTPVAQTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPHI----LKKETPIYLHIGVYAFRRSALFSYIASAPSPLSQAEDLEQLRVLEHGGSIHVCVVEAKSPSVDYPEDISKVEEYL 246          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_HAEIG (3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus influenzae (strain PittGG) GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.338e-16
Identity = 56/142 (39.44%), Postives = 77/142 (54.23%), Query Frame = -1
Query:  429 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ--------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKI 827
            P I+  V   L      + S AV     E+ F+PN VK + D  GY +YFSR +IPY++   +N Q          YL H+GI +Y S F+K Y    PT L+  E LEQL+VL NG ++ V +  +  A GVD  ED+EK+
Sbjct:  106 PVIVRQVADNLAKFNVNMASLAVKIHDGEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLADAYLRHIGIYAYRSGFIKQYMQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKV 247          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_ENTS8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=kdsB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.338e-16
Identity = 53/143 (37.06%), Postives = 81/143 (56.64%), Query Frame = -1
Query:  414 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ----FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMR 827
            P II  V + L +A   + + AV     ++AF+PN VK V+D  GYA+YFSR  IP+++      +      +L H+GI  Y + F++ Y     +PL+  E LEQL+VL +G K+ V +       GVD PED+E++ + MR
Sbjct:  106 PAIIRQVAENLASAQAGMATLAVPVHDAQEAFNPNAVKVVMDAQGYALYFSRATIPWDRDRFAQSRDTIGDSFLRHIGIYGYRAGFIRRYVTWPASPLEQIEMLEQLRVLWHGEKIHVAVAAVVPGTGVDTPEDLERVRAEMR 248          
The following BLAST results are available for this feature:
BLAST of DN621045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
KDSB_VIBCH1.790e-1637.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBC31.790e-1637.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_POLNA1.790e-1638.303-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PHOLL1.790e-1637.763-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_HAEIN1.790e-1637.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_HAEI81.790e-1637.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLFF1.790e-1633.823-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLAB1.790e-1635.293-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_HAEIG2.338e-1639.443-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ENTS82.338e-1637.063-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06C19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621045 ID=DN621045; Name=DN621045; organism=Citrus sinensis; type=EST; length=830bp
TTTTTTAAAGAACTTAAATATTATCGCTTTTTATTCCATTCATTACAGCA
AGAAGTACTTTAAAATATGTAATATGGTACATATTCACAAACTCAACAAC
AGACGAGGACCCCAAAAAAACAAAAAAAAGTATTATTACAATGAATCAAC
GTCTAACTCAAAATTGCTGTTACTCACAGCTACTGGTACAAGTACACCCA
CAAAAACTCCGGTAACTCCAACAATGGGAAAAACCGTGGCAGGCAAATAT
AAATAGAATTATTTTCCCGGGGAAGAGACTGTCACAGAGAGAAAGAACAC
ACCACCAATCAAACTATAATTAACATGGAGCAAGCTGACTGCTGGTACAG
GCAAATTCGCATCCTTTCCTTTTAATCAGATTATGTCACTAAAAACTAGG
ACAAGTTTCTCTCACGCATAAATGATTCTATCTTCTCAACGTCTTCTGGA
GCATCAACACCGTGAGCTTCATGGTCTACCTTTATAACCTTCATCTTATA
GCCATTCTCAAGGACTTTCAGCTGTTCTAGATCCTCTTCTAGTTGTAGGG
GAGTAGGATGAAGGCCTGGATATATCTTCAGGAAGTTTGAGTCATAGCTC
TGAATTCCAAGATGAAGCAAATATGGAAATTGTGGATTGACTTTTCCTGA
CTTGTTATATGGAATTAATCCCCTTGAAAAATATATGGCATAACCATGAT
TATCCACAACACATTTCACCCGATTTGGATCAAATGCATCTTCAGGTTTT
AAAGATGTCACAGCAGTACTGAACACTGCATCTGGGGCTGCCTGCAGAGC
TTTCACAACACCATCTATAATCTCTGGTTC
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