DN621028

Overview
NameDN621028
Unique NameDN621028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621028 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 59/191 (30.89%), Postives = 96/191 (50.26%), Query Frame = -2
Query:  109 VAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAI-----GG---PGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEF------------MSLFIDGK 618
            V K+SI+PR G A G T+  P+ E  +  L     L  ++   LGGR AEEV++    ++TGA +D  + + +A + V  +G ++KIG V++     GG    GG+P+   Q            D+V  EV  L+++A   A  ++  + D+L  L   L ++E V+GEE             +++FI GK
Sbjct:  615 VEKLSILPRSGGALGFTYIPPTHE--DRYLLFIDELHGRLVTLLGGRAAEEVVYSGR-ISTGALDDIRRATDMAYKAVAEYGLNEKIGPVSVATLSAGGIDDSGGSPWGRDQGH--------LVDLVQREVTNLLQSALDVALTVVRANPDVLEGLGAQLEDEEKVEGEELQKWLNRVVPSEELAVFIKGK 794          
BLAST of DN621028 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 55/180 (30.56%), Postives = 90/180 (50.00%), Query Frame = -2
Query:  136 YDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMV-----ERFGFS---KKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTR--------AKQIITTHIDILHKLAQLLIEKETVDGEE 627
            +D  A   ++P G+   ++ F P E+ ++ G  +  Y++ QM VA GGR AE V+FG +NVT G  +D  +++++AR+MV      R G +   KKIG+V +     NP  G+ +  + D+       +  EV EL     TR        A   +  +  IL  + + L+EK  + G E
Sbjct:  783 FDWHAFSQLLPGGKETAVSVFYPREDMVDQGYTTFGYMKMQMVVAHGGRCAERVVFG-DNVTDGGKDDLEKITKIAREMVISPQSARLGLTQLVKKIGMVDL---PDNPD-GELIKYRWDHPHVMPAEMSVEVSELFTRELTRYIEETEELAMNALRANRHILDLITRELLEKSRITGLE 957          
BLAST of DN621028 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 59/193 (30.57%), Postives = 94/193 (48.70%), Query Frame = -2
Query:  103 VAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAI-----GG---PGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEF------------MSLFIDGKAE 618
            V K+SI+PR G A G T+  P+ E  +  L     L  ++   LGGR AEEV+     V+TGA +D  + + +A + V  +G +++IG +++     GG    GG+P+   Q            D+V  EV+ L+++A   A  ++  +  +L  L   L E E V+GEE             ++ FI GK E
Sbjct:  632 VEKLSILPRSGGALGFTYTPPTTE--DRYLLFVDELRGRLVTLLGGRAAEEVVLSGR-VSTGALDDIRRATDMAYKAVAEYGLNQRIGPISVATLSNGGLDESGGSPWGRDQGH--------LVDLVQREVKALLQSALDVALSVVRANPTVLEGLGAYLEENEKVEGEELQEWLKSVVAPKELTSFIRGKQE 813          
The following BLAST results are available for this feature:
BLAST of DN621028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
FTSH9_ARATH1.632e-1230.89Cell division protease ftsH homolog 9, chloroplast... [more]
FTSHC_ARATH8.099e-1230.56Cell division protease ftsH homolog 12, chloroplas... [more]
FTSH7_ORYSJ2.356e-1130.57Cell division protease ftsH homolog 7, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06C08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621028 ID=DN621028; Name=DN621028; organism=Citrus sinensis; type=EST; length=628bp
TTTTTTTTTCTAAAATGATAATTTAATTACTTGATTTTACATGGGCATAT
ACAACACGAATCTGAATTCTGATTCTTTCATGTACAATCAGGCAACAAAT
AGCTCAGCTTTTCCATCAATGAAAAGGCTCATAAATTCTTCTCCATCAAC
GGTTTCTTTCTCTATGAGGAGTTGAGCAAGCTTGTGAAGGATGTCAATGT
GGGTTGTGATGATCTGCTTGGCCCTTGTATATGCTGTTTCAACCAATTCT
CTGACCTCTGCATCCACCACATCGGCAGTTGCCATGGAGTAGTCTTTCTG
AGAAGACATTTGTTGACCCAAGAATGGATTTCCACCAGGTCCTCCAATGG
CAACTAGTCCAATTTTCTTGCTAAACCCAAATCTTTCAACCATCTGCCGT
GCTACCCGTGAAACTTGCATGAAGTCATTTGATGCTCCTGTTGTCACATT
TTCCTCGCCAAAAATGACTTCTTCTGCAACCCTTCCACCAAGTGCGACAG
CCATCTGATTCTCCAGGTAGCTCCTGCTGTAAAGTCCAGACTCAAGCCTC
TCTTCACTTGGAGCGAAAAAGGTAAGCCCACCAGCTTGGCCACGAGGAAT
GATGGAAATCTTGGCTACAGGATCATAT
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